RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 FEM1BQ9UK73 627 aa7.44□□□□□ -1.22
USP3-210ENST00000559192 AJAP1Q9UKB5 411 aaPredicted RBP7.44□□□□□ -1.22
USP3-210ENST00000559192 CORO1CQ9ULV4 474 aaPredicted RBP7.44□□□□□ -1.22
USP3-210ENST00000559192 TBX20Q9UMR3 447 aa7.44□□□□□ -1.22
USP3-210ENST00000559192 SPEF2Q9C093 1822 aa7.44□□□□□ -1.22
USP3-210ENST00000559192 MYH8P13535 1937 aa7.44□□□□□ -1.22
USP3-210ENST00000559192 GRAP2O75791 330 aa7.44□□□□□ -1.22
USP3-210ENST00000559192 LDHAP00338 332 aaKnown RBP7.44□□□□□ -1.22
USP3-210ENST00000559192 SSTR1P30872 391 aa7.44□□□□□ -1.22
USP3-210ENST00000559192 SREBF1P36956 1147 aa7.44□□□□□ -1.22
USP3-210ENST00000559192 ARL4AP40617 200 aa7.44□□□□□ -1.22
USP3-210ENST00000559192 PEX5P50542 639 aa7.44□□□□□ -1.22
USP3-210ENST00000559192 ASTE1Q2TB18 679 aaPredicted RBP7.44□□□□□ -1.22
USP3-210ENST00000559192 ARSHQ5FYA8 562 aa7.44□□□□□ -1.22
USP3-210ENST00000559192 FAM160B1Q5W0V3 765 aa7.44□□□□□ -1.22
USP3-210ENST00000559192 DDX50Q9BQ39 737 aaKnown RBP7.44□□□□□ -1.22
USP3-210ENST00000559192 NDEL1Q9GZM8 345 aa7.44□□□□□ -1.22
USP3-210ENST00000559192 KIAA1586Q9HCI6 787 aa7.44□□□□□ -1.22
USP3-210ENST00000559192 PSMG1O95456 288 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 TPP2P29144 1249 aaPredicted RBP7.43□□□□□ -1.22
USP3-210ENST00000559192 ITKQ08881 620 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 BMPR2Q13873 1038 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 TTC27Q6P3X3 843 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 RNF169Q8NCN4 708 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 SPATA18Q8TC71 538 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 SPOCK2Q92563 424 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 KCNH7Q9NS40 1196 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 GTSE1Q9NYZ3 720 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 NYAP2Q9P242 653 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 SLC12A6Q9UHW9 1150 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 COPG1Q9Y678 874 aaKnown RBP7.43□□□□□ -1.22
USP3-210ENST00000559192 RPTORQ8N122 1335 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 DISP2A7MBM2 1401 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 XPO1O14980 1071 aaKnown RBP7.43□□□□□ -1.22
USP3-210ENST00000559192 SLITRK3O94933 977 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 FGRP09769 529 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 SLURP2P0DP57 97 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 GZMAP12544 262 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 CREB1P16220 341 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 BCAR1P56945 870 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 SESN2P58004 480 aaPredicted RBP7.43□□□□□ -1.22
USP3-210ENST00000559192 AP1B1Q10567 949 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 NFIAQ12857 509 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 TFDP2Q14188 446 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 ZNF667Q5HYK9 610 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 GPAT2Q6NUI2 795 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 TMCO5AQ8N6Q1 288 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 PSPC1Q8WXF1 523 aaKnown RBP7.43□□□□□ -1.22
USP3-210ENST00000559192 EXT2Q93063 718 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 TMA16Q96EY4 203 aaKnown RBP7.43□□□□□ -1.22
USP3-210ENST00000559192 FOXP3Q9BZS1 431 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 OLFML3Q9NRN5 406 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 DNPEPQ9ULA0 475 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 STARD13Q9Y3M8 1113 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.43□□□□□ -1.22
USP3-210ENST00000559192 APOL1O14791 398 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 DEAF1O75398 565 aaPredicted RBP7.43□□□□□ -1.22
USP3-210ENST00000559192 PROSCO94903 275 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 TYK2P29597 1187 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 CCNG2Q16589 344 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 WLSQ5T9L3 541 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 SPOCD1Q6ZMY3 1216 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 ACAD11Q709F0 780 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 NCAPG2Q86XI2 1143 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 PALB2Q86YC2 1186 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 MCOLN2Q8IZK6 566 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 NDUFAF2Q8N183 169 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 CCNYL1Q8N7R7 359 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 MCPH1Q8NEM0 835 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 OXNAD1Q96HP4 312 aaPredicted RBP7.43□□□□□ -1.22
USP3-210ENST00000559192 DACH2Q96NX9 599 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 MXRA8Q9BRK3 442 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 RPF1Q9H9Y2 349 aaKnown RBP7.43□□□□□ -1.22
USP3-210ENST00000559192 TEKT2Q9UIF3 430 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 SLC12A4Q9UP95 1085 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 E7ENQ6 273 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 FCHO1O14526 889 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 ENO3P13929 434 aaPredicted RBP7.43□□□□□ -1.22
USP3-210ENST00000559192 HDAC4P56524 1084 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 KRT76Q01546 638 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 OTUD4Q01804 1114 aaKnown RBP7.43□□□□□ -1.22
USP3-210ENST00000559192 PPP3CAQ08209 521 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 MRPL28Q13084 256 aaKnown RBP7.43□□□□□ -1.22
USP3-210ENST00000559192 NCOA4Q13772 614 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 ECHDC2Q86YB7 292 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 AGBL1Q96MI9 1066 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 STMN3Q9NZ72 180 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 TAGLN3Q9UI15 199 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 LRCH1Q9Y2L9 728 aa7.43□□□□□ -1.22
USP3-210ENST00000559192 COL5A2P05997 1499 aaPredicted RBP7.43□□□□□ -1.22
USP3-210ENST00000559192 SNRPAP09012 282 aaKnown RBP7.42□□□□□ -1.22
USP3-210ENST00000559192 STX1BP61266 288 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 PIGHQ14442 188 aaPredicted RBP7.42□□□□□ -1.22
USP3-210ENST00000559192 EFTUD2Q15029 972 aaKnown RBP eCLIP7.42□□□□□ -1.221e-7■■□□□ 13.5
USP3-210ENST00000559192 RNF220Q5VTB9 566 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 PRR5LQ6MZQ0 368 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 MFN1Q8IWA4 741 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 SULF1Q8IWU6 871 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 B4GALNT2Q8NHY0 566 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 INPP5DQ92835 1189 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms