RNA–Protein interactions for RNA: ENST00000558072.5

TPM1-209, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-209ENST00000558072 HERC2P3Q9BVR0 1158 aa13.18□□□□□ -0.3
TPM1-209ENST00000558072 VN1R3Q9BXE9 311 aa13.18□□□□□ -0.3
TPM1-209ENST00000558072 SDCBP2Q9H190 292 aa13.18□□□□□ -0.3
TPM1-209ENST00000558072 LHX5Q9H2C1 402 aa13.18□□□□□ -0.3
TPM1-209ENST00000558072 ARHGAP20Q9P2F6 1191 aa13.18□□□□□ -0.3
TPM1-209ENST00000558072 AJAP1Q9UKB5 411 aaPredicted RBP13.18□□□□□ -0.3
TPM1-209ENST00000558072 INTUQ9ULD6 942 aa13.18□□□□□ -0.3
TPM1-209ENST00000558072 BACE2Q9Y5Z0 518 aa13.18□□□□□ -0.3
TPM1-209ENST00000558072 A0A1W2PPC1 479 aa13.17□□□□□ -0.3
TPM1-209ENST00000558072 C5orf67F2Z3F1 127 aa13.17□□□□□ -0.3
TPM1-209ENST00000558072 HCRTO43612 131 aa13.17□□□□□ -0.3
TPM1-209ENST00000558072 LCA5LO95447 670 aa13.17□□□□□ -0.3
TPM1-209ENST00000558072 URODP06132 367 aa13.17□□□□□ -0.3
TPM1-209ENST00000558072 CCDC175P0C221 793 aa13.17□□□□□ -0.3
TPM1-209ENST00000558072 CTNNB1P35222 781 aa13.17□□□□□ -0.3
TPM1-209ENST00000558072 GLUD2P49448 558 aa13.17□□□□□ -0.3
TPM1-209ENST00000558072 KIF11P52732 1056 aa13.17□□□□□ -0.3
TPM1-209ENST00000558072 MRPL58Q14197 206 aaKnown RBP13.17□□□□□ -0.3
TPM1-209ENST00000558072 INTS6LQ5JSJ4 861 aaKnown RBP13.17□□□□□ -0.3
TPM1-209ENST00000558072 VARS2Q5ST30 1063 aaKnown RBP13.17□□□□□ -0.3
TPM1-209ENST00000558072 LCLAT1Q6UWP7 414 aa13.17□□□□□ -0.3
TPM1-209ENST00000558072 ZNF571Q7Z3V5 609 aaPredicted RBP13.17□□□□□ -0.3
TPM1-209ENST00000558072 CEP57Q86XR8 500 aa13.17□□□□□ -0.3
TPM1-209ENST00000558072 WHAMMQ8TF30 809 aa13.17□□□□□ -0.3
TPM1-209ENST00000558072 PIK3R5Q8WYR1 880 aa13.17□□□□□ -0.3
TPM1-209ENST00000558072 CYFIP2Q96F07 1278 aa13.17□□□□□ -0.3
TPM1-209ENST00000558072 FUBP3Q96I24 572 aaKnown RBP eCLIP13.17□□□□□ -0.3
TPM1-209ENST00000558072 VCPIP1Q96JH7 1222 aa13.17□□□□□ -0.3
TPM1-209ENST00000558072 TGS1Q96RS0 853 aaKnown RBP13.17□□□□□ -0.3
TPM1-209ENST00000558072 CHP1Q99653 195 aa13.17□□□□□ -0.3
TPM1-209ENST00000558072 HNRNPABQ99729 332 aaKnown RBP13.17□□□□□ -0.3
TPM1-209ENST00000558072 TSGA10Q9BZW7 698 aa13.17□□□□□ -0.3
TPM1-209ENST00000558072 ELOVL4Q9GZR5 314 aa13.17□□□□□ -0.3
TPM1-209ENST00000558072 MRPL17Q9NRX2 175 aaKnown RBP13.17□□□□□ -0.3
TPM1-209ENST00000558072 SEPT11Q9NVA2 429 aaKnown RBP13.17□□□□□ -0.3
TPM1-209ENST00000558072 ADAMTS1Q9UHI8 967 aa13.17□□□□□ -0.3
TPM1-209ENST00000558072 NOCTQ9UK39 431 aaKnown RBP13.17□□□□□ -0.3
TPM1-209ENST00000558072 PCDHGC5Q9Y5F6 944 aa13.17□□□□□ -0.3
TPM1-209ENST00000558072 VWA8A3KMH1 1905 aa13.17□□□□□ -0.3
TPM1-209ENST00000558072 RFXAPO00287 272 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 RTN2O75298 545 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 FGF18O76093 207 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 C1RP00736 705 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 PDGFRBP09619 1106 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 MYBL1P10243 752 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 NSFP46459 744 aaKnown RBP13.16□□□□□ -0.3
TPM1-209ENST00000558072 BCAT1P54687 386 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 CCZ1BP86790 482 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 CCZ1P86791 482 aaPredicted RBP13.16□□□□□ -0.3
TPM1-209ENST00000558072 TAP1Q03518 808 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 GOLGA8FQ08AF8 430 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 GOLGA8DPQ0D2H9 430 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 CTXN3Q4LDR2 81 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 ALKBH5Q6P6C2 394 aaKnown RBP13.16□□□□□ -0.3
TPM1-209ENST00000558072 TAS1R1Q7RTX1 841 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 ACOT1Q86TX2 421 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 NOP9Q86U38 636 aaKnown RBP13.16□□□□□ -0.3
TPM1-209ENST00000558072 TMEM139Q8IV31 216 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 RNF168Q8IYW5 571 aaPredicted RBP13.16□□□□□ -0.3
TPM1-209ENST00000558072 MYCBPAPQ8TBZ2 947 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 STK32AQ8WU08 396 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 UBE2Q2Q8WVN8 375 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 LRCH3Q96II8 777 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 CEP295NLQ96MC4 621 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 GPR62Q9BZJ7 368 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 UBXN6Q9BZV1 441 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 ABCB6Q9NP58 842 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 NGRNQ9NPE2 291 aaKnown RBP13.16□□□□□ -0.3
TPM1-209ENST00000558072 CYLDQ9NQC7 956 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 CHST7Q9NS84 486 aa13.16□□□□□ -0.3
TPM1-209ENST00000558072 TIMM13Q9Y5L4 95 aaPredicted RBP13.16□□□□□ -0.3
TPM1-209ENST00000558072 SOWAHDA6NJG2 315 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 EFEMP2O95967 443 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 DNAJB2P25686 324 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 TKTP29401 623 aaKnown RBP13.15□□□□□ -0.3
TPM1-209ENST00000558072 ACADSBP45954 432 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 DSG1Q02413 1049 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 IFI16Q16666 785 aaKnown RBP13.15□□□□□ -0.3
TPM1-209ENST00000558072 CCDC142Q17RM4 750 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 ASTE1Q2TB18 679 aaPredicted RBP13.15□□□□□ -0.3
TPM1-209ENST00000558072 CCDC122Q5T0U0 273 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 PRPF38BQ5VTL8 546 aaKnown RBP13.15□□□□□ -0.3
TPM1-209ENST00000558072 TPGS2Q68CL5 300 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 ACAD10Q6JQN1 1059 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 FAM171BQ6P995 826 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 ELMSAN1Q6PJG2 1045 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 KIAA1328Q86T90 577 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 GLYCTKQ8IVS8 523 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 ANKRD52Q8NB46 1076 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 SLC30A5Q8TAD4 765 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 SPPL2BQ8TCT7 592 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 GDPD5Q8WTR4 605 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 AUTS2Q8WXX7 1259 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 DDX1Q92499 740 aaKnown RBP13.15□□□□□ -0.3
TPM1-209ENST00000558072 MED10Q9BTT4 135 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 EMILIN2Q9BXX0 1053 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 ZCWPW1Q9H0M4 648 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 LMAN2LQ9H0V9 348 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 FNIP2Q9P278 1114 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 HSFX1Q9UBD0 423 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms