RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 ENKD1Q9H0I2 346 aa3.63□□□□□ -1.83
TRAV28-201ENST00000557548 SLC6A15Q9H2J7 730 aa3.63□□□□□ -1.83
TRAV28-201ENST00000557548 GSTO2Q9H4Y5 243 aa3.63□□□□□ -1.83
TRAV28-201ENST00000557548 KCNK12Q9HB15 430 aa3.63□□□□□ -1.83
TRAV28-201ENST00000557548 USP40Q9NVE5 1235 aa3.63□□□□□ -1.83
TRAV28-201ENST00000557548 MRPS18AQ9NVS2 196 aaKnown RBP3.63□□□□□ -1.83
TRAV28-201ENST00000557548 FBXO34Q9NWN3 711 aa3.63□□□□□ -1.83
TRAV28-201ENST00000557548 XPR1Q9UBH6 696 aa3.63□□□□□ -1.83
TRAV28-201ENST00000557548 HERC5Q9UII4 1024 aaKnown RBP3.63□□□□□ -1.83
TRAV28-201ENST00000557548 ZMYND8Q9ULU4 1186 aaPredicted RBP3.63□□□□□ -1.83
TRAV28-201ENST00000557548 TMEM98Q9Y2Y6 226 aa3.63□□□□□ -1.83
TRAV28-201ENST00000557548 MTO1Q9Y2Z2 717 aaKnown RBP3.63□□□□□ -1.83
TRAV28-201ENST00000557548 LOC102723971A0A1B0GUV8 181 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 CDHR4A6H8M9 788 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 A6NCN8 305 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 B4E171 279 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 IQCJ-SCHIP1C9J366 451 aaPredicted RBP3.62□□□□□ -1.83
TRAV28-201ENST00000557548 PCDH17O14917 1159 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 HOXC11O43248 304 aaPredicted RBP3.62□□□□□ -1.83
TRAV28-201ENST00000557548 KCNQ3O43525 872 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 FAM155BO75949 473 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 INMTO95050 263 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 AGFG2O95081 481 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 SNRPA1P09661 255 aaKnown RBP3.62□□□□□ -1.83
TRAV28-201ENST00000557548 CKBP12277 381 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 ALAS1P13196 640 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 TPH1P17752 444 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 CST5P28325 142 aaPredicted RBP3.62□□□□□ -1.83
TRAV28-201ENST00000557548 ATICP31939 592 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 CSF2RBP32927 897 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 TSPAN7P41732 249 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 CPT1AP50416 773 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 PTTG1IPP53801 180 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 SEC24CP53992 1094 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 FSTL1Q12841 308 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 CUL4BQ13620 913 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 PDE1CQ14123 709 aaPredicted RBP3.62□□□□□ -1.83
TRAV28-201ENST00000557548 ARHGEF7Q14155 803 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 USP10Q14694 798 aaKnown RBP3.62□□□□□ -1.83
TRAV28-201ENST00000557548 KCNAB1Q14722 419 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 FAM214AQ32MH5 1076 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 GAGE13Q4V321 117 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.62□□□□□ -1.83
TRAV28-201ENST00000557548 GPATCH4Q5T3I0 446 aaKnown RBP3.62□□□□□ -1.83
TRAV28-201ENST00000557548 ANKS6Q68DC2 871 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 PLAG1Q6DJT9 500 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 TMEM132EQ6IEE7 984 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 USP17L6PQ6QN14 398 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 USP30Q70CQ3 517 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 ATG4DQ86TL0 474 aaPredicted RBP3.62□□□□□ -1.83
TRAV28-201ENST00000557548 CCDC117Q8IWD4 279 aaPredicted RBP3.62□□□□□ -1.83
TRAV28-201ENST00000557548 SLC17A8Q8NDX2 589 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 DNERQ8NFT8 737 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 SCAMP5Q8TAC9 235 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 THAP4Q8WY91 577 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 HTRA1Q92743 480 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 DDX17Q92841 729 aaKnown RBP3.62□□□□□ -1.83
TRAV28-201ENST00000557548 SCAMP4Q969E2 229 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 ZBTB10Q96DT7 871 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 AJUBAQ96IF1 538 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 KCNC2Q96PR1 638 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 PPP1R9BQ96SB3 815 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 GPHA2Q96T91 129 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 SPATA25Q9BR10 227 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 CPEB1Q9BZB8 566 aaKnown RBP3.62□□□□□ -1.83
TRAV28-201ENST00000557548 IMPG2Q9BZV3 1241 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 MCOLN1Q9GZU1 580 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 EPC1Q9H2F5 836 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 NSUN3Q9H649 340 aaKnown RBP3.62□□□□□ -1.83
TRAV28-201ENST00000557548 EPS8L2Q9H6S3 715 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 PRDM8Q9NQV8 689 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 FAM53CQ9NYF3 392 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 LPAR3Q9UBY5 353 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 RGS17Q9UGC6 210 aaPredicted RBP3.62□□□□□ -1.83
TRAV28-201ENST00000557548 SLC13A4Q9UKG4 626 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 PMF1-BGLAPU3KQ54 211 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 ITIH6Q6UXX5 1313 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 PNPLA7Q6ZV29 1317 aa3.62□□□□□ -1.83
TRAV28-201ENST00000557548 E9PLN8 166 aa3.61□□□□□ -1.83
TRAV28-201ENST00000557548 TCERG1O14776 1098 aaKnown RBP3.61□□□□□ -1.83
TRAV28-201ENST00000557548 PJA2O43164 708 aa3.61□□□□□ -1.83
TRAV28-201ENST00000557548 FIBPO43427 364 aa3.61□□□□□ -1.83
TRAV28-201ENST00000557548 DNPH1O43598 174 aa3.61□□□□□ -1.83
TRAV28-201ENST00000557548 VPS4BO75351 444 aa3.61□□□□□ -1.83
TRAV28-201ENST00000557548 STC2O76061 302 aa3.61□□□□□ -1.83
TRAV28-201ENST00000557548 TSPAN15O95858 294 aa3.61□□□□□ -1.83
TRAV28-201ENST00000557548 CHEK2O96017 543 aa3.61□□□□□ -1.83
TRAV28-201ENST00000557548 AMHP03971 560 aa3.61□□□□□ -1.83
TRAV28-201ENST00000557548 ANXA1P04083 346 aa3.61□□□□□ -1.83
TRAV28-201ENST00000557548 RXRAP19793 462 aa3.61□□□□□ -1.83
TRAV28-201ENST00000557548 RPL13P26373 211 aaKnown RBP3.61□□□□□ -1.83
TRAV28-201ENST00000557548 MST1P26927 711 aa3.61□□□□□ -1.83
TRAV28-201ENST00000557548 PTDSS1P48651 473 aaKnown RBP3.61□□□□□ -1.83
TRAV28-201ENST00000557548 ALDH18A1P54886 795 aaKnown RBP3.61□□□□□ -1.83
TRAV28-201ENST00000557548 NPEPPSP55786 919 aa3.61□□□□□ -1.83
TRAV28-201ENST00000557548 CLRN1P58418 232 aa3.61□□□□□ -1.83
TRAV28-201ENST00000557548 AP2B1P63010 937 aa3.61□□□□□ -1.83
TRAV28-201ENST00000557548 HGFACQ04756 655 aa3.61□□□□□ -1.83
TRAV28-201ENST00000557548 NSUN2Q08J23 767 aaKnown RBP eCLIP3.61□□□□□ -1.83
TRAV28-201ENST00000557548 MRPL49Q13405 166 aaKnown RBP3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms