RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 CYB561D2O14569 222 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 COL6A1P12109 1028 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 MCM3P25205 808 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 FAM189BP81408 668 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 C2orf54Q08AI8 447 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 PDCLQ13371 301 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 TUSC3Q13454 348 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 ZNF268Q14587 947 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-233ENST00000557529 GOLGA7BQ2TAP0 167 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 PTPN20Q4JDL3 420 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 DCUN1D2Q6PH85 259 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 PHLDB2Q86SQ0 1253 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 TMEM86AQ8N2M4 240 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 BTBD6Q96KE9 485 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 PLVAPQ9BX97 442 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 MIOSQ9NXC5 875 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 PCDHA3Q9Y5H8 950 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 SIGLEC16A6NMB1 481 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 CCDC188H7C350 402 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 RHOXF2BP0C7M4 288 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 H2AFXP16104 143 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-233ENST00000557529 GABRB2P47870 512 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 PEX5P50542 639 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 RWDD2BP57060 319 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 PSMC1P62191 440 aaKnown RBP13.2□□□□□ -0.3
SHMT2-233ENST00000557529 PIGHQ14442 188 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-233ENST00000557529 GLE1Q53GS7 698 aaKnown RBP13.2□□□□□ -0.3
SHMT2-233ENST00000557529 PPP1R15BQ5SWA1 713 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 PPP1R26Q5T8A7 1209 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-233ENST00000557529 SEL1L2Q5TEA6 688 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 LLGL2Q6P1M3 1020 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 GLB1LQ6UWU2 654 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 PDCL2Q8N4E4 241 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 SPATA18Q8TC71 538 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 STK32AQ8WU08 396 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 RUBCNQ92622 972 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 ALG3Q92685 438 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 SENP8Q96LD8 212 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 RNPC3Q96LT9 517 aaKnown RBP13.2□□□□□ -0.3
SHMT2-233ENST00000557529 CPXM1Q96SM3 734 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 RHOXF2Q9BQY4 288 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 PARD6BQ9BYG5 372 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 ANKZF1Q9H8Y5 726 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 SMARCAL1Q9NZC9 954 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 EHD2Q9NZN4 543 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 CYTH4Q9UIA0 394 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 TMEM59LQ9UK28 342 aa13.2□□□□□ -0.3
SHMT2-233ENST00000557529 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.2□□□□□ -0.3
SHMT2-233ENST00000557529 ARHGEF37A1IGU5 675 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 PSTPIP1O43586 416 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 PARNO95453 639 aaKnown RBP13.19□□□□□ -0.3
SHMT2-233ENST00000557529 MYCP01106 439 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-233ENST00000557529 PDGFRBP09619 1106 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 FGFR1P11362 822 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 KRT3P12035 628 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 LHX1P48742 406 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 CLCNKBP51801 687 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 AFF1P51825 1210 aaKnown RBP13.19□□□□□ -0.3
SHMT2-233ENST00000557529 BRD3Q15059 726 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 PPP2R5EQ16537 467 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 UPP1Q16831 310 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 PKDCCQ504Y2 493 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 CYP4A22Q5TCH4 519 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 DCAF12L1Q5VU92 463 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 DSTYKQ6XUX3 929 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 MTERF4Q7Z6M4 381 aaKnown RBP13.19□□□□□ -0.3
SHMT2-233ENST00000557529 RTN4RL1Q86UN2 441 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-233ENST00000557529 XYLT1Q86Y38 959 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 C12orf29Q8N999 325 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 UBA3Q8TBC4 463 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 URGCPQ8TCY9 931 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 FNIP1Q8TF40 1166 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 SEPT8Q92599 483 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 KRT35Q92764 455 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 APBB2Q92870 758 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 MCEEQ96PE7 176 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 TRIM7Q9C029 511 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 RBM12Q9NTZ6 932 aaKnown RBP13.19□□□□□ -0.3
SHMT2-233ENST00000557529 FAM49BQ9NUQ9 324 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 KANSL3Q9P2N6 904 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 RAB21Q9UL25 225 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 INPP5FQ9Y2H2 1132 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 NME7Q9Y5B8 376 aa13.19□□□□□ -0.3
SHMT2-233ENST00000557529 GOLGA6L10A0A0M3HER8 536 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 CASTOR2A6NHX0 329 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 KRIT1O00522 736 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 GABRDO14764 452 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 POMCP01189 267 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 FGGP02679 453 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 ERBB2P04626 1255 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 PFKMP08237 780 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 IBSPP21815 317 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-233ENST00000557529 LMO2P25791 158 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 AARSP49588 968 aaKnown RBP eCLIP13.18□□□□□ -0.3
SHMT2-233ENST00000557529 BCAT1P54687 386 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 RNASE9P60153 205 aaKnown RBP13.18□□□□□ -0.3
SHMT2-233ENST00000557529 BST2Q10589 180 aaKnown RBP13.18□□□□□ -0.3
SHMT2-233ENST00000557529 LONRF2Q1L5Z9 754 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 WSCD1Q658N2 575 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 C8orf74Q6P047 294 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms