RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 TRIM68Q6AZZ1 485 aa17.1■□□□□ 0.33
SHMT2-231ENST00000557433 PASD1Q8IV76 773 aa17.1■□□□□ 0.33
SHMT2-231ENST00000557433 ZNF276Q8N554 614 aa17.1■□□□□ 0.33
SHMT2-231ENST00000557433 TMEM35BQ8NCS4 154 aa17.1■□□□□ 0.33
SHMT2-231ENST00000557433 PTCD3Q96EY7 689 aaKnown RBP17.1■□□□□ 0.33
SHMT2-231ENST00000557433 TAAR1Q96RJ0 339 aa17.1■□□□□ 0.33
SHMT2-231ENST00000557433 PAFAH2Q99487 392 aa17.1■□□□□ 0.33
SHMT2-231ENST00000557433 FAM167BQ9BTA0 163 aa17.1■□□□□ 0.33
SHMT2-231ENST00000557433 SLC38A10Q9HBR0 1119 aa17.1■□□□□ 0.33
SHMT2-231ENST00000557433 PXMP2Q9NR77 195 aa17.1■□□□□ 0.33
SHMT2-231ENST00000557433 A8MXQ7 604 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 PI4K2BG5E9Z4 385 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 ATP9AO75110 1047 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 STBD1O95210 358 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 DHRS4L1P0CG22 281 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 NEFHP12036 1026 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 ADRA1DP25100 572 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 ARFIP2P53365 341 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 CCDC6Q16204 474 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 WDR78Q5VTH9 848 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 NAIF1Q69YI7 327 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-231ENST00000557433 DCUN1D2Q6PH85 259 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 SAMD1Q6SPF0 538 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-231ENST00000557433 TAS1R3Q7RTX0 852 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 NAT8LQ8N9F0 302 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 ZNF606Q8WXB4 792 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 ZNF333Q96JL9 665 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 RMDN3Q96TC7 470 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 TSSK1BQ9BXA7 367 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 IMPG2Q9BZV3 1241 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 APOBEC3GQ9HC16 384 aaKnown RBP17.09■□□□□ 0.33
SHMT2-231ENST00000557433 KLF11O14901 512 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 FAM155BO75949 473 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 ATP5BP06576 529 aaKnown RBP17.09■□□□□ 0.33
SHMT2-231ENST00000557433 KRT7P08729 469 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 GSTA2P09210 222 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 CTCFP49711 727 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-231ENST00000557433 RPS6P62753 249 aaKnown RBP17.09■□□□□ 0.33
SHMT2-231ENST00000557433 NOP14P78316 857 aaKnown RBP17.09■□□□□ 0.33
SHMT2-231ENST00000557433 CDK16Q00536 496 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 PLCB3Q01970 1234 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 SPDYE2Q495Y8 402 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 CCDC62Q6P9F0 684 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 FAM83AQ86UY5 434 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 TRIM42Q8IWZ5 723 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 PDIK1LQ8N165 341 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 UBR7Q8N806 425 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.09■□□□□ 0.33
SHMT2-231ENST00000557433 CEP120Q8N960 986 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 FLAD1Q8NFF5 587 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 TCP10LQ8TDR4 215 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 APBB2Q92870 758 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 CYTH2Q99418 400 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 CADM1Q9BY67 442 aaKnown RBP17.09■□□□□ 0.33
SHMT2-231ENST00000557433 SYNCQ9H7C4 482 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 GABBR1Q9UBS5 961 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 STRIP2Q9ULQ0 834 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 CNTNAP1P78357 1384 aa17.09■□□□□ 0.33
SHMT2-231ENST00000557433 GSC2O15499 205 aa17.08■□□□□ 0.33
SHMT2-231ENST00000557433 ENTPD5O75356 428 aa17.08■□□□□ 0.33
SHMT2-231ENST00000557433 MYCLP12524 364 aaPredicted RBP17.08■□□□□ 0.33
SHMT2-231ENST00000557433 ETS1P14921 441 aa17.08■□□□□ 0.33
SHMT2-231ENST00000557433 CCND2P30279 289 aa17.08■□□□□ 0.33
SHMT2-231ENST00000557433 CDH5P33151 784 aaPredicted RBP17.08■□□□□ 0.33
SHMT2-231ENST00000557433 RPL7AP62424 266 aaKnown RBP17.08■□□□□ 0.33
SHMT2-231ENST00000557433 MAP3K10Q02779 954 aa17.08■□□□□ 0.33
SHMT2-231ENST00000557433 DLGAP5Q15398 846 aa17.08■□□□□ 0.33
SHMT2-231ENST00000557433 NBPF20Q3BBV1 942 aa17.08■□□□□ 0.33
SHMT2-231ENST00000557433 ATP13A4Q4VNC1 1196 aa17.08■□□□□ 0.33
SHMT2-231ENST00000557433 PPP1R15BQ5SWA1 713 aa17.08■□□□□ 0.33
SHMT2-231ENST00000557433 ARHGEF16Q5VV41 709 aa17.08■□□□□ 0.33
SHMT2-231ENST00000557433 C3orf62Q6ZUJ4 267 aa17.08■□□□□ 0.33
SHMT2-231ENST00000557433 PAXIP1Q6ZW49 1069 aaPredicted RBP17.08■□□□□ 0.33
SHMT2-231ENST00000557433 PALM2Q8IXS6 379 aa17.08■□□□□ 0.33
SHMT2-231ENST00000557433 THNSL1Q8IYQ7 743 aa17.08■□□□□ 0.33
SHMT2-231ENST00000557433 TTC8Q8TAM2 541 aa17.08■□□□□ 0.33
SHMT2-231ENST00000557433 DCAKDQ8WVC6 231 aa17.08■□□□□ 0.33
SHMT2-231ENST00000557433 SKA1Q96BD8 255 aa17.08■□□□□ 0.33
SHMT2-231ENST00000557433 MIPEPQ99797 713 aa17.08■□□□□ 0.33
SHMT2-231ENST00000557433 POLR3FQ9H1D9 316 aaPredicted RBP17.08■□□□□ 0.33
SHMT2-231ENST00000557433 XPNPEP1Q9NQW7 623 aa17.08■□□□□ 0.33
SHMT2-231ENST00000557433 GINM1Q9NU53 330 aa17.08■□□□□ 0.33
SHMT2-231ENST00000557433 RBAKQ9NYW8 714 aaPredicted RBP17.08■□□□□ 0.33
SHMT2-231ENST00000557433 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.08■□□□□ 0.33
SHMT2-231ENST00000557433 ZNRF3Q9ULT6 936 aa17.08■□□□□ 0.33
SHMT2-231ENST00000557433 H0YIN7 160 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 GYG2O15488 501 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 IFNB1P01574 187 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 MT-ND3P03897 115 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 CFHP08603 1231 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 FGFR1P11362 822 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 EIF4BP23588 611 aaKnown RBP17.08■□□□□ 0.32
SHMT2-231ENST00000557433 SLC34A1Q06495 639 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 CDK18Q07002 472 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 ZNF252P-AS1Q0IIN9 211 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 GRM1Q13255 1194 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 TFDP1Q14186 410 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 TAZQ16635 292 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 PLEKHG4Q58EX7 1191 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 SPOPLQ6IQ16 392 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms