RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 FUBP3Q96I24 572 aaKnown RBP eCLIP13.35□□□□□ -0.27
SLIRP-209ENST00000557342 DUSP9Q99956 384 aaKnown RBP13.35□□□□□ -0.27
SLIRP-209ENST00000557342 MRPL45Q9BRJ2 306 aaKnown RBP13.35□□□□□ -0.27
SLIRP-209ENST00000557342 C1QTNF1Q9BXJ1 281 aa13.35□□□□□ -0.27
SLIRP-209ENST00000557342 CEP72Q9P209 647 aa13.35□□□□□ -0.27
SLIRP-209ENST00000557342 GTF3C4Q9UKN8 822 aa13.35□□□□□ -0.27
SLIRP-209ENST00000557342 SORCS3Q9UPU3 1222 aa13.35□□□□□ -0.27
SLIRP-209ENST00000557342 GREB1Q4ZG55 1949 aa13.35□□□□□ -0.27
SLIRP-209ENST00000557342 A8MXQ7 604 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 N4BP1O75113 896 aaKnown RBP13.34□□□□□ -0.27
SLIRP-209ENST00000557342 FGF19O95750 216 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 PDGFRBP09619 1106 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 TRIM21P19474 475 aaKnown RBP13.34□□□□□ -0.27
SLIRP-209ENST00000557342 LMO2P25791 158 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 EPHA5P54756 1037 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 STX17P56962 302 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 RPL10AP62906 217 aaKnown RBP13.34□□□□□ -0.27
SLIRP-209ENST00000557342 MTMR3Q13615 1198 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 TAF12Q16514 161 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 CFAP221Q4G0U5 840 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 PRSS36Q5K4E3 855 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 FBXL13Q8NEE6 735 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 ITFG1Q8TB96 612 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 TAS1R2Q8TE23 839 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 FGF13Q92913 245 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 PSMG2Q969U7 264 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 FAXDC2Q96IV6 333 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 TNIP3Q96KP6 325 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 PKMYT1Q99640 499 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 PI4K2AQ9BTU6 479 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 DNAI2Q9GZS0 605 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 DNAJC25Q9H1X3 360 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 EPHX3Q9H6B9 360 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 TMLHEQ9NVH6 421 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 GDE1Q9NZC3 331 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 MAGEC2Q9UBF1 373 aaPredicted RBP13.34□□□□□ -0.27
SLIRP-209ENST00000557342 DACH1Q9UI36 760 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 RWDD2AQ9UIY3 292 aa13.34□□□□□ -0.27
SLIRP-209ENST00000557342 ZNF638Q14966 1978 aaKnown RBP13.34□□□□□ -0.27
SLIRP-209ENST00000557342 OBSL1O75147 1896 aa13.33□□□□□ -0.27
SLIRP-209ENST00000557342 MYBPHLA2RUH7 354 aa13.33□□□□□ -0.28
SLIRP-209ENST00000557342 MBD3O95983 291 aa13.33□□□□□ -0.28
SLIRP-209ENST00000557342 MYL4P12829 197 aa13.33□□□□□ -0.28
SLIRP-209ENST00000557342 MAGEA11P43364 429 aa13.33□□□□□ -0.28
SLIRP-209ENST00000557342 PSMC1P62191 440 aaKnown RBP13.33□□□□□ -0.28
SLIRP-209ENST00000557342 NOP14P78316 857 aaKnown RBP13.33□□□□□ -0.28
SLIRP-209ENST00000557342 ZXDAP98168 799 aa13.33□□□□□ -0.28
SLIRP-209ENST00000557342 WDR44Q5JSH3 913 aa13.33□□□□□ -0.28
SLIRP-209ENST00000557342 MTSS1LQ765P7 747 aa13.33□□□□□ -0.28
SLIRP-209ENST00000557342 DNAJB7Q7Z6W7 309 aaPredicted RBP13.33□□□□□ -0.28
SLIRP-209ENST00000557342 UBALD2Q8IYN6 164 aa13.33□□□□□ -0.28
SLIRP-209ENST00000557342 TTC9BQ8N6N2 239 aa13.33□□□□□ -0.28
SLIRP-209ENST00000557342 MYCBPAPQ8TBZ2 947 aa13.33□□□□□ -0.28
SLIRP-209ENST00000557342 EDAQ92838 391 aa13.33□□□□□ -0.28
SLIRP-209ENST00000557342 GPR88Q9GZN0 384 aa13.33□□□□□ -0.28
SLIRP-209ENST00000557342 SMYD3Q9H7B4 428 aa13.33□□□□□ -0.28
SLIRP-209ENST00000557342 KCNK12Q9HB15 430 aa13.33□□□□□ -0.28
SLIRP-209ENST00000557342 CYP3A43Q9HB55 503 aa13.33□□□□□ -0.28
SLIRP-209ENST00000557342 RAB20Q9NX57 234 aa13.33□□□□□ -0.28
SLIRP-209ENST00000557342 NUP210Q8TEM1 1887 aaPredicted RBP13.33□□□□□ -0.28
SLIRP-209ENST00000557342 CUL9Q8IWT3 2517 aa13.33□□□□□ -0.28
SLIRP-209ENST00000557342 HCRTO43612 131 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 ATP2C2O75185 946 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 SOAT2O75908 522 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 ASGR2P07307 311 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 CSH1P0DML2 217 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 CSH2P0DML3 217 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 CCDC192P0DO97 292 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 PTPN1P18031 435 aaKnown RBP13.32□□□□□ -0.28
SLIRP-209ENST00000557342 ATF6P18850 670 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 CDH8P55286 799 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 NLRP12P59046 1061 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 CYP27A1Q02318 531 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 CETN1Q12798 172 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 TDGQ13569 410 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 SLC5A9Q2M3M2 681 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 SPOPLQ6IQ16 392 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 VSTM1Q6UX27 236 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 SCARA5Q6ZMJ2 495 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 UNC93AQ86WB7 457 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 NPAS3Q8IXF0 933 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 HS6ST3Q8IZP7 471 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 TTC39CQ8N584 583 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 B3GALNT2Q8NCR0 500 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 GPT2Q8TD30 523 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 ING5Q8WYH8 240 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 SLC35C1Q96A29 364 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 MYLPFQ96A32 169 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 PCED1BQ96HM7 432 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 CEP295NLQ96MC4 621 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 GCNAQ96QF7 691 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 SRRTQ9BXP5 876 aaKnown RBP13.32□□□□□ -0.28
SLIRP-209ENST00000557342 LRRC3Q9BY71 257 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 BCO2Q9BYV7 579 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 NIF3L1Q9GZT8 377 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 CRTAC1Q9NQ79 661 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 COQ4Q9Y3A0 265 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 ATP8B3O60423 1300 aa13.32□□□□□ -0.28
SLIRP-209ENST00000557342 TTC28Q96AY4 2481 aa13.31□□□□□ -0.28
SLIRP-209ENST00000557342 ANHXE9PGG2 379 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms