RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, human

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SLIRP-208	ENST00000556956	SWAP70	Q9UH65	585 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	FBXL7	Q9UJT9	491 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	ZFR2	Q9UPR6	939 aa	Known RBP	3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	REXO2	Q9Y3B8	237 aa	Known RBP	3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	MSRB2	Q9Y3D2	182 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	PCDHB6	Q9Y5E3	794 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	LRRC37A3	O60309	1634 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	GRIN2D	O15399	1336 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	UBN2	Q6ZU65	1347 aa		3.14	□□□□□ -1.91
SLIRP-208	ENST00000556956	NID2	Q14112	1375 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	TNR	Q92752	1358 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	TMEM2	Q9UHN6	1383 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	PEAK1	Q9H792	1746 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	DLG5	Q8TDM6	1919 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	GOLGA6L10	A0A0M3HER8	536 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	TTC26	A0AVF1	554 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CCDC189	A1A4V9	331 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	PRAMEF22	A3QJZ6	481 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	NPEPPSL1	A6NEC2	478 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CFAP73	A6NFT4	308 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CCDC85C	A6NKD9	419 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956		B4E1Z4	1266 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956		E7EVH7	732 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	GCOM1	H8Y6P7	765 aa	Predicted RBP	3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CES2	O00748	559 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	PSMA7	O14818	248 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	ZNF185	O15231	689 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	PRPF3	O43395	683 aa	Known RBP	3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	LAMTOR5	O43504	91 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	RANBP6	O60518	1105 aa	Known RBP	3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	MSC	O60682	206 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	RPN1	P04843	607 aa	Known RBP	3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CKM	P06732	381 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	GSTA1	P08263	222 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	UQCRFS1P1	P0C7P4	283 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	MYZAP	P0CAP1	466 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CALM1	P0DP23	149 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CALM2	P0DP24	149 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CALM3	P0DP25	149 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	MYBL2	P10244	700 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	COL6A2	P12110	1019 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	ZNF28	P17035	718 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	GNAT2	P19087	354 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	SCP2	P22307	547 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	GJA4	P35212	333 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	ADD2	P35612	726 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	LONP1	P36776	959 aa	Known RBP	3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	MAGEA1	P43355	309 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	TRAPPC10	P48553	1259 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	EPHA5	P54756	1037 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	PPP2CB	P62714	309 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	TNNC1	P63316	161 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	PPP2CA	P67775	309 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	GUCY1A3	Q02108	690 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	ICA1	Q05084	483 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	GRIN1	Q05586	938 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	NFATC3	Q12968	1075 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	KCNB1	Q14721	858 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	GPR19	Q15760	415 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	SMAD2	Q15796	467 aa	Known RBP	3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CRY1	Q16526	586 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CDC37	Q16543	378 aa	Predicted RBP	3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CCDC96	Q2M329	555 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CCDC57	Q2TAC2	916 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	PAN2	Q504Q3	1202 aa	Known RBP	3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	TTC19	Q6DKK2	380 aa	Predicted RBP	3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	C8orf74	Q6P047	294 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CYB5D1	Q6P9G0	228 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CRELD2	Q6UXH1	353 aa	Predicted RBP	3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	MFSD6	Q6ZSS7	791 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	ARHGEF18	Q6ZSZ5	1173 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	KCTD1	Q719H9	257 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CACNA2D4	Q7Z3S7	1137 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	MAATS1	Q7Z4T9	603 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CROCCP2	Q86T23	111 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	MICU3	Q86XE3	530 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CEP57	Q86XR8	500 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	GSPT2	Q8IYD1	628 aa	Known RBP	3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CCDC13	Q8IYE1	715 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CACNA2D3	Q8IZS8	1091 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	IQCK	Q8N0W5	287 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	TTC5	Q8N0Z6	440 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	ADSSL1	Q8N142	457 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	RNF10	Q8N5U6	811 aa	Known RBP	3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	WDR48	Q8TAF3	677 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	MYCBPAP	Q8TBZ2	947 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CLEC4D	Q8WXI8	215 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	TAF4B	Q92750	862 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	FBXW5	Q969U6	566 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	MKL1	Q969V6	931 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CENPT	Q96BT3	561 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	HOOK2	Q96ED9	719 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	EPSTI1	Q96J88	318 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	GDAP1L1	Q96MZ0	367 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	SCLT1	Q96NL6	688 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	OSBPL9	Q96SU4	736 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	DHRS4	Q9BTZ2	278 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	MOV10L1	Q9BXT6	1211 aa	Known RBP	3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	RNF26	Q9BY78	433 aa	Predicted RBP	3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	NACAP1	Q9BZK3	213 aa		3.13	□□□□□ -1.91

Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms