RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 CCDC93Q567U6 631 aa4.48□□□□□ -1.69
SCFD1-218ENST00000556256 TREML2Q5T2D2 321 aa4.48□□□□□ -1.69
SCFD1-218ENST00000556256 TRIM72Q6ZMU5 477 aa4.48□□□□□ -1.69
SCFD1-218ENST00000556256 HDAC10Q969S8 669 aa4.48□□□□□ -1.69
SCFD1-218ENST00000556256 VPS33BQ9H267 617 aa4.48□□□□□ -1.69
SCFD1-218ENST00000556256 BRD9Q9H8M2 597 aa4.48□□□□□ -1.69
SCFD1-218ENST00000556256 CALCOCO1Q9P1Z2 691 aa4.48□□□□□ -1.69
SCFD1-218ENST00000556256 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.48□□□□□ -1.69
SCFD1-218ENST00000556256 ZNF112Q9UJU3 913 aa4.48□□□□□ -1.69
SCFD1-218ENST00000556256 RAD54BQ9Y620 910 aa4.48□□□□□ -1.69
SCFD1-218ENST00000556256 PRSS29PA6NIE9 313 aa4.47□□□□□ -1.69
SCFD1-218ENST00000556256 ZNF785A8K8V0 405 aa4.47□□□□□ -1.69
SCFD1-218ENST00000556256 SLC16A3O15427 465 aaKnown RBP4.47□□□□□ -1.69
SCFD1-218ENST00000556256 GJB1P08034 283 aa4.47□□□□□ -1.69
SCFD1-218ENST00000556256 PRF1P14222 555 aa4.47□□□□□ -1.69
SCFD1-218ENST00000556256 IL1R2P27930 398 aa4.47□□□□□ -1.69
SCFD1-218ENST00000556256 CLCN2P51788 898 aa4.47□□□□□ -1.69
SCFD1-218ENST00000556256 GYS2P54840 703 aa4.47□□□□□ -1.69
SCFD1-218ENST00000556256 RBMS2Q15434 407 aaKnown RBP4.47□□□□□ -1.69
SCFD1-218ENST00000556256 TRIM71Q2Q1W2 868 aaKnown RBP4.47□□□□□ -1.69
SCFD1-218ENST00000556256 FCRL6Q6DN72 434 aa4.47□□□□□ -1.69
SCFD1-218ENST00000556256 LHFPL2Q6ZUX7 228 aa4.47□□□□□ -1.69
SCFD1-218ENST00000556256 JAZF1Q86VZ6 243 aa4.47□□□□□ -1.69
SCFD1-218ENST00000556256 RBMXL3Q8N7X1 1067 aaKnown RBP4.47□□□□□ -1.69
SCFD1-218ENST00000556256 NELL2Q99435 816 aa4.47□□□□□ -1.69
SCFD1-218ENST00000556256 CNPPD1Q9BV87 410 aa4.47□□□□□ -1.69
SCFD1-218ENST00000556256 TINAGL1Q9GZM7 467 aaPredicted RBP4.47□□□□□ -1.69
SCFD1-218ENST00000556256 ADAMTS5Q9UNA0 930 aa4.47□□□□□ -1.69
SCFD1-218ENST00000556256 SCAF8Q9UPN6 1271 aaKnown RBP4.47□□□□□ -1.69
SCFD1-218ENST00000556256 NOTCH4Q99466 2003 aa4.46□□□□□ -1.69
SCFD1-218ENST00000556256 CD8B2A6NJW9 211 aa4.46□□□□□ -1.7
SCFD1-218ENST00000556256 F2RL2O00254 374 aa4.46□□□□□ -1.7
SCFD1-218ENST00000556256 TLR5O60602 858 aa4.46□□□□□ -1.7
SCFD1-218ENST00000556256 CHEK2O96017 543 aa4.46□□□□□ -1.7
SCFD1-218ENST00000556256 ZNF135P52742 658 aaPredicted RBP4.46□□□□□ -1.7
SCFD1-218ENST00000556256 ERVK-21P61565 698 aa4.46□□□□□ -1.7
SCFD1-218ENST00000556256 KRT78Q8N1N4 520 aa4.46□□□□□ -1.7
SCFD1-218ENST00000556256 PPP1R10Q96QC0 940 aaKnown RBP4.46□□□□□ -1.7
SCFD1-218ENST00000556256 FSD1LQ9BXM9 530 aa4.46□□□□□ -1.7
SCFD1-218ENST00000556256 CAAP1Q9H8G2 361 aa4.46□□□□□ -1.7
SCFD1-218ENST00000556256 GPR35Q9HC97 309 aa4.46□□□□□ -1.7
SCFD1-218ENST00000556256 TUBD1Q9UJT1 453 aa4.46□□□□□ -1.7
SCFD1-218ENST00000556256 LIMCH1Q9UPQ0 1083 aa4.46□□□□□ -1.7
SCFD1-218ENST00000556256 AGAP1Q9UPQ3 857 aa4.46□□□□□ -1.7
SCFD1-218ENST00000556256 SH2B3Q9UQQ2 575 aa4.46□□□□□ -1.7
SCFD1-218ENST00000556256 IPPQ9Y573 584 aa4.46□□□□□ -1.7
SCFD1-218ENST00000556256 POC1B-GALNT4F8VUJ3 575 aa4.45□□□□□ -1.7
SCFD1-218ENST00000556256 OAZ2O95190 189 aa4.45□□□□□ -1.7
SCFD1-218ENST00000556256 KIF20AO95235 890 aa4.45□□□□□ -1.7
SCFD1-218ENST00000556256 CYP2A6P11509 494 aaPredicted RBP4.45□□□□□ -1.7
SCFD1-218ENST00000556256 GCLCP48506 637 aaPredicted RBP4.45□□□□□ -1.7
SCFD1-218ENST00000556256 PDE1AP54750 535 aa4.45□□□□□ -1.7
SCFD1-218ENST00000556256 SP2Q02086 613 aa4.45□□□□□ -1.7
SCFD1-218ENST00000556256 TCF15Q12870 199 aa4.45□□□□□ -1.7
SCFD1-218ENST00000556256 ERV3-1Q14264 604 aa4.45□□□□□ -1.7
SCFD1-218ENST00000556256 LEXMQ3ZCV2 418 aa4.45□□□□□ -1.7
SCFD1-218ENST00000556256 PARS2Q7L3T8 475 aaKnown RBP4.45□□□□□ -1.7
SCFD1-218ENST00000556256 GALNT4Q8N4A0 578 aa4.45□□□□□ -1.7
SCFD1-218ENST00000556256 LRRC71Q8N4P6 559 aa4.45□□□□□ -1.7
SCFD1-218ENST00000556256 AFAP1L2Q8N4X5 818 aa4.45□□□□□ -1.7
SCFD1-218ENST00000556256 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.45□□□□□ -1.7
SCFD1-218ENST00000556256 LYZL4Q96KX0 146 aa4.45□□□□□ -1.7
SCFD1-218ENST00000556256 FAM118BQ9BPY3 351 aa4.45□□□□□ -1.7
SCFD1-218ENST00000556256 RLIMQ9NVW2 624 aa4.45□□□□□ -1.7
SCFD1-218ENST00000556256 SIDT1Q9NXL6 827 aaKnown RBP4.45□□□□□ -1.7
SCFD1-218ENST00000556256 H7C1Q1 480 aa4.44□□□□□ -1.7
SCFD1-218ENST00000556256 NDUFS2O75306 463 aa4.44□□□□□ -1.7
SCFD1-218ENST00000556256 ABLIM3O94929 683 aa4.44□□□□□ -1.7
SCFD1-218ENST00000556256 EYA4O95677 639 aa4.44□□□□□ -1.7
SCFD1-218ENST00000556256 MALP21145 153 aa4.44□□□□□ -1.7
SCFD1-218ENST00000556256 EDNRBP24530 442 aa4.44□□□□□ -1.7
SCFD1-218ENST00000556256 CYP2C19P33261 490 aa4.44□□□□□ -1.7
SCFD1-218ENST00000556256 KCNJ5P48544 419 aa4.44□□□□□ -1.7
SCFD1-218ENST00000556256 SNAPC2Q13487 334 aa4.44□□□□□ -1.7
SCFD1-218ENST00000556256 GTF2H3Q13889 308 aa4.44□□□□□ -1.7
SCFD1-218ENST00000556256 BOP1Q14137 746 aaKnown RBP4.44□□□□□ -1.7
SCFD1-218ENST00000556256 KRTAP27-1Q3LI81 207 aa4.44□□□□□ -1.7
SCFD1-218ENST00000556256 C3orf36Q3SXR2 165 aa4.44□□□□□ -1.7
SCFD1-218ENST00000556256 ICE2Q659A1 982 aa4.44□□□□□ -1.7
SCFD1-218ENST00000556256 TMEM108Q6UXF1 575 aa4.44□□□□□ -1.7
SCFD1-218ENST00000556256 C9orf47Q6ZRZ4 202 aa4.44□□□□□ -1.7
SCFD1-218ENST00000556256 USP43Q70EL4 1123 aa4.44□□□□□ -1.7
SCFD1-218ENST00000556256 AMOTL1Q8IY63 956 aa4.44□□□□□ -1.7
SCFD1-218ENST00000556256 ZBTB8BQ8NAP8 495 aaPredicted RBP4.44□□□□□ -1.7
SCFD1-218ENST00000556256 DAZAP1Q96EP5 407 aaKnown RBP4.44□□□□□ -1.7
SCFD1-218ENST00000556256 VRK1Q99986 396 aaPredicted RBP4.44□□□□□ -1.7
SCFD1-218ENST00000556256 CFAP97Q9P2B7 532 aa4.44□□□□□ -1.7
SCFD1-218ENST00000556256 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.43□□□□□ -1.7
SCFD1-218ENST00000556256 NT5C1B-RDH14C9J2C7 533 aa4.43□□□□□ -1.7
SCFD1-218ENST00000556256 ADAM10O14672 748 aa4.43□□□□□ -1.7
SCFD1-218ENST00000556256 HTRA2O43464 458 aaPredicted RBP4.43□□□□□ -1.7
SCFD1-218ENST00000556256 FESP07332 822 aa4.43□□□□□ -1.7
SCFD1-218ENST00000556256 NPSP0C0P6 89 aa4.43□□□□□ -1.7
SCFD1-218ENST00000556256 SOX5P35711 763 aa4.43□□□□□ -1.7
SCFD1-218ENST00000556256 PHKA1P46020 1223 aa4.43□□□□□ -1.7
SCFD1-218ENST00000556256 SEMA3AQ14563 771 aa4.43□□□□□ -1.7
SCFD1-218ENST00000556256 CLUL1Q15846 466 aa4.43□□□□□ -1.7
SCFD1-218ENST00000556256 KHDC1Q4VXA5 237 aaKnown RBP4.43□□□□□ -1.7
SCFD1-218ENST00000556256 C10orf25Q5T742 122 aa4.43□□□□□ -1.7
SCFD1-218ENST00000556256 PPP1R32Q7Z5V6 425 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms