RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 RLIMQ9NVW2 624 aa4.91□□□□□ -1.62
SCFD1-216ENST00000555550 SH3BP4Q9P0V3 963 aa4.91□□□□□ -1.62
SCFD1-216ENST00000555550 CNTNAP2Q9UHC6 1331 aa4.91□□□□□ -1.62
SCFD1-216ENST00000555550 NT5C1B-RDH14C9J2C7 533 aa4.9□□□□□ -1.63
SCFD1-216ENST00000555550 E9PLN8 166 aa4.9□□□□□ -1.63
SCFD1-216ENST00000555550 F5H697 171 aa4.9□□□□□ -1.63
SCFD1-216ENST00000555550 PPP6CO00743 305 aa4.9□□□□□ -1.63
SCFD1-216ENST00000555550 VPS4BO75351 444 aa4.9□□□□□ -1.63
SCFD1-216ENST00000555550 POU2F2P09086 479 aa4.9□□□□□ -1.63
SCFD1-216ENST00000555550 CBSLP0DN79 551 aa4.9□□□□□ -1.63
SCFD1-216ENST00000555550 CERS1P27544 350 aa4.9□□□□□ -1.63
SCFD1-216ENST00000555550 TKTP29401 623 aaKnown RBP4.9□□□□□ -1.63
SCFD1-216ENST00000555550 PRDX5P30044 214 aa4.9□□□□□ -1.63
SCFD1-216ENST00000555550 CBSP35520 551 aa4.9□□□□□ -1.63
SCFD1-216ENST00000555550 NPTX2P47972 431 aa4.9□□□□□ -1.63
SCFD1-216ENST00000555550 POU6F2P78424 691 aaPredicted RBP4.9□□□□□ -1.63
SCFD1-216ENST00000555550 HLXQ14774 488 aaPredicted RBP4.9□□□□□ -1.63
SCFD1-216ENST00000555550 PROSER3Q2NL68 480 aa4.9□□□□□ -1.63
SCFD1-216ENST00000555550 TMPRSS9Q7Z410 1059 aa4.9□□□□□ -1.63
SCFD1-216ENST00000555550 FAM177A1Q8N128 213 aaPredicted RBP4.9□□□□□ -1.63
SCFD1-216ENST00000555550 PBKQ96KB5 322 aa4.9□□□□□ -1.63
SCFD1-216ENST00000555550 VKORC1Q9BQB6 163 aa4.9□□□□□ -1.63
SCFD1-216ENST00000555550 CNPPD1Q9BV87 410 aa4.9□□□□□ -1.63
SCFD1-216ENST00000555550 SIK2Q9H0K1 926 aa4.9□□□□□ -1.63
SCFD1-216ENST00000555550 ZNF580Q9UK33 172 aa4.9□□□□□ -1.63
SCFD1-216ENST00000555550 TISP43B9A030 160 aa4.89□□□□□ -1.63
SCFD1-216ENST00000555550 E7ENX8 843 aa4.89□□□□□ -1.63
SCFD1-216ENST00000555550 SMIM22K7EJ46 135 aa4.89□□□□□ -1.63
SCFD1-216ENST00000555550 ONECUT2O95948 504 aa4.89□□□□□ -1.63
SCFD1-216ENST00000555550 TOP3BO95985 862 aaKnown RBP4.89□□□□□ -1.63
SCFD1-216ENST00000555550 CHEK2O96017 543 aa4.89□□□□□ -1.63
SCFD1-216ENST00000555550 PF4V1P10720 104 aa4.89□□□□□ -1.63
SCFD1-216ENST00000555550 RARBP10826 455 aa4.89□□□□□ -1.63
SCFD1-216ENST00000555550 SFPQP23246 707 aaKnown RBP eCLIP4.89□□□□□ -1.63
SCFD1-216ENST00000555550 FXR1P51114 621 aaKnown RBP eCLIP4.89□□□□□ -1.63
SCFD1-216ENST00000555550 HK3P52790 923 aa4.89□□□□□ -1.63
SCFD1-216ENST00000555550 IGBP1P78318 339 aa4.89□□□□□ -1.63
SCFD1-216ENST00000555550 TAP2Q03519 686 aa4.89□□□□□ -1.63
SCFD1-216ENST00000555550 ZNF260Q3ZCT1 412 aa4.89□□□□□ -1.63
SCFD1-216ENST00000555550 PRR18Q8N4B5 295 aa4.89□□□□□ -1.63
SCFD1-216ENST00000555550 HOOK2Q96ED9 719 aa4.89□□□□□ -1.63
SCFD1-216ENST00000555550 CAMKK2Q96RR4 588 aa4.89□□□□□ -1.63
SCFD1-216ENST00000555550 TPSD1Q9BZJ3 242 aa4.89□□□□□ -1.63
SCFD1-216ENST00000555550 ANKRD6Q9Y2G4 727 aa4.89□□□□□ -1.63
SCFD1-216ENST00000555550 A0A0B4J269 797 aa4.88□□□□□ -1.63
SCFD1-216ENST00000555550 H3BUI4 141 aa4.88□□□□□ -1.63
SCFD1-216ENST00000555550 M0QYG6 137 aa4.88□□□□□ -1.63
SCFD1-216ENST00000555550 TRIAP1O43715 76 aa4.88□□□□□ -1.63
SCFD1-216ENST00000555550 FAM163BP0C2L3 166 aa4.88□□□□□ -1.63
SCFD1-216ENST00000555550 ZFXP17010 805 aaPredicted RBP4.88□□□□□ -1.63
SCFD1-216ENST00000555550 CHRM3P20309 590 aa4.88□□□□□ -1.63
SCFD1-216ENST00000555550 AKAP5P24588 427 aa4.88□□□□□ -1.63
SCFD1-216ENST00000555550 NDUFV1P49821 464 aa4.88□□□□□ -1.63
SCFD1-216ENST00000555550 MAP2K6P52564 334 aa4.88□□□□□ -1.63
SCFD1-216ENST00000555550 TUBB3Q13509 450 aa4.88□□□□□ -1.63
SCFD1-216ENST00000555550 HABP2Q14520 560 aaPredicted RBP4.88□□□□□ -1.63
SCFD1-216ENST00000555550 FAM90A1Q86YD7 464 aa4.88□□□□□ -1.63
SCFD1-216ENST00000555550 GRAMD1CQ8IYS0 662 aa4.88□□□□□ -1.63
SCFD1-216ENST00000555550 FAM9AQ8IZU1 332 aaPredicted RBP4.88□□□□□ -1.63
SCFD1-216ENST00000555550 PCSK9Q8NBP7 692 aaKnown RBP4.88□□□□□ -1.63
SCFD1-216ENST00000555550 PSD4Q8NDX1 1056 aa4.88□□□□□ -1.63
SCFD1-216ENST00000555550 MVB12AQ96EY5 273 aa4.88□□□□□ -1.63
SCFD1-216ENST00000555550 FAM167AQ96KS9 214 aa4.88□□□□□ -1.63
SCFD1-216ENST00000555550 MAP3K14Q99558 947 aa4.88□□□□□ -1.63
SCFD1-216ENST00000555550 GTPBP4Q9BZE4 634 aaKnown RBP4.88□□□□□ -1.63
SCFD1-216ENST00000555550 SERTAD4Q9NUC0 356 aa4.88□□□□□ -1.63
SCFD1-216ENST00000555550 PNPOQ9NVS9 261 aa4.88□□□□□ -1.63
SCFD1-216ENST00000555550 ZDHHC8Q9ULC8 765 aa4.88□□□□□ -1.63
SCFD1-216ENST00000555550 PCDHA1Q9Y5I3 950 aa4.88□□□□□ -1.63
SCFD1-216ENST00000555550 KCNU1A8MYU2 1149 aa4.87□□□□□ -1.63
SCFD1-216ENST00000555550 H3BNC9 293 aa4.87□□□□□ -1.63
SCFD1-216ENST00000555550 ALDH1L1O75891 902 aa4.87□□□□□ -1.63
SCFD1-216ENST00000555550 KIF20AO95235 890 aa4.87□□□□□ -1.63
SCFD1-216ENST00000555550 AHSGP02765 367 aa4.87□□□□□ -1.63
SCFD1-216ENST00000555550 TYRP14679 529 aa4.87□□□□□ -1.63
SCFD1-216ENST00000555550 JUPP14923 745 aa4.87□□□□□ -1.63
SCFD1-216ENST00000555550 ITGALP20701 1170 aa4.87□□□□□ -1.63
SCFD1-216ENST00000555550 NR4A2P43354 598 aa4.87□□□□□ -1.63
SCFD1-216ENST00000555550 KIF22Q14807 665 aa4.87□□□□□ -1.63
SCFD1-216ENST00000555550 RABEP1Q15276 862 aa4.87□□□□□ -1.63
SCFD1-216ENST00000555550 IFIT1BQ5T764 474 aaKnown RBP4.87□□□□□ -1.63
SCFD1-216ENST00000555550 PRAMEF17Q5VTA0 474 aa4.87□□□□□ -1.63
SCFD1-216ENST00000555550 TAF2Q6P1X5 1199 aa4.87□□□□□ -1.63
SCFD1-216ENST00000555550 POC1BQ8TC44 478 aa4.87□□□□□ -1.63
SCFD1-216ENST00000555550 BRIX1Q8TDN6 353 aaKnown RBP4.87□□□□□ -1.63
SCFD1-216ENST00000555550 REPS1Q96D71 796 aa4.87□□□□□ -1.63
SCFD1-216ENST00000555550 NUP88Q99567 741 aaPredicted RBP4.87□□□□□ -1.63
SCFD1-216ENST00000555550 AMBRA1Q9C0C7 1298 aa4.87□□□□□ -1.63
SCFD1-216ENST00000555550 TINAGL1Q9GZM7 467 aaPredicted RBP4.87□□□□□ -1.63
SCFD1-216ENST00000555550 MRPL46Q9H2W6 279 aaKnown RBP4.87□□□□□ -1.63
SCFD1-216ENST00000555550 SMOC2Q9H3U7 446 aa4.87□□□□□ -1.63
SCFD1-216ENST00000555550 GPR35Q9HC97 309 aa4.87□□□□□ -1.63
SCFD1-216ENST00000555550 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.87□□□□□ -1.63
SCFD1-216ENST00000555550 MTMR4Q9NYA4 1195 aa4.87□□□□□ -1.63
SCFD1-216ENST00000555550 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.87□□□□□ -1.63
SCFD1-216ENST00000555550 RAD54BQ9Y620 910 aa4.87□□□□□ -1.63
SCFD1-216ENST00000555550 OFD1O75665 1012 aa4.86□□□□□ -1.63
SCFD1-216ENST00000555550 SOAT2O75908 522 aa4.86□□□□□ -1.63
SCFD1-216ENST00000555550 JTBO76095 146 aa4.86□□□□□ -1.63
SCFD1-216ENST00000555550 SNHG28P0DPA3 235 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms