RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 IL21Q9HBE4 155 aa12.7□□□□□ -0.38
VRK1-204ENST00000555351 UXTQ9UBK9 157 aaPredicted RBP12.7□□□□□ -0.38
VRK1-204ENST00000555351 CDH9Q9ULB4 789 aa12.7□□□□□ -0.38
VRK1-204ENST00000555351 COL4A2P08572 1712 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 H0Y858 1186 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 CLIC2O15247 247 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 MAPK13O15264 365 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 EXOC3O60645 756 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 RHOBTB3O94955 611 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 RPN1P04843 607 aaKnown RBP12.69□□□□□ -0.38
VRK1-204ENST00000555351 CSH1P0DML2 217 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 CSH2P0DML3 217 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 WARSP23381 471 aaKnown RBP12.69□□□□□ -0.38
VRK1-204ENST00000555351 GABRR2P28476 465 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 RPS9P46781 194 aaKnown RBP12.69□□□□□ -0.38
VRK1-204ENST00000555351 NDUFA8P51970 172 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 NUCB2P80303 420 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 ENPEPQ07075 957 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 FCHO2Q0JRZ9 810 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 SNW1Q13573 536 aaKnown RBP12.69□□□□□ -0.38
VRK1-204ENST00000555351 TAF12Q16514 161 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 NFIL3Q16649 462 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 FAM171BQ6P995 826 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 VSTM1Q6UX27 236 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 VITQ6UXI7 678 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 ZNF852Q6ZMS4 543 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 C4orf50Q6ZRC1 276 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 GRAMD1CQ8IYS0 662 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 RDH13Q8NBN7 331 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 KIAA0895Q8NCT3 520 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 FAM200AQ8TCP9 573 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 CLDN23Q96B33 292 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 MYRFLQ96LU7 910 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 IER2Q9BTL4 223 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 MKNK1Q9BUB5 465 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 KCTD10Q9H3F6 313 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 ATXN3LQ9H3M9 355 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 SEMA4AQ9H3S1 761 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 SLITRK6Q9H5Y7 841 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 TASP1Q9H6P5 420 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 ZNF334Q9HCZ1 680 aaPredicted RBP12.69□□□□□ -0.38
VRK1-204ENST00000555351 LTB4R2Q9NPC1 389 aa12.69□□□□□ -0.38
VRK1-204ENST00000555351 ABI2Q9NYB9 513 aaPredicted RBP12.69□□□□□ -0.38
VRK1-204ENST00000555351 HEPACAM2A8MVW5 462 aa12.68□□□□□ -0.38
VRK1-204ENST00000555351 NRG2O14511 850 aaPredicted RBP12.68□□□□□ -0.38
VRK1-204ENST00000555351 ZNF263O14978 683 aa12.68□□□□□ -0.38
VRK1-204ENST00000555351 CHADO15335 359 aa12.68□□□□□ -0.38
VRK1-204ENST00000555351 SOAT2O75908 522 aa12.68□□□□□ -0.38
VRK1-204ENST00000555351 NOL4O94818 638 aa12.68□□□□□ -0.38
VRK1-204ENST00000555351 DLATP10515 647 aaKnown RBP12.68□□□□□ -0.38
VRK1-204ENST00000555351 HMGA1P17096 107 aaKnown RBP12.68□□□□□ -0.38
VRK1-204ENST00000555351 KCNB1Q14721 858 aa12.68□□□□□ -0.38
VRK1-204ENST00000555351 ANGPT1Q15389 498 aa12.68□□□□□ -0.38
VRK1-204ENST00000555351 ARHGAP29Q52LW3 1261 aa12.68□□□□□ -0.38
VRK1-204ENST00000555351 LMBRD2Q68DH5 695 aaPredicted RBP12.68□□□□□ -0.38
VRK1-204ENST00000555351 MAMSTRQ6ZN01 415 aa12.68□□□□□ -0.38
VRK1-204ENST00000555351 KRBA2Q6ZNG9 492 aa12.68□□□□□ -0.38
VRK1-204ENST00000555351 ARID3BQ8IVW6 561 aaPredicted RBP12.68□□□□□ -0.38
VRK1-204ENST00000555351 TMC2Q8TDI7 906 aa12.68□□□□□ -0.38
VRK1-204ENST00000555351 PARD3BQ8TEW8 1205 aa12.68□□□□□ -0.38
VRK1-204ENST00000555351 KBTBD7Q8WVZ9 684 aa12.68□□□□□ -0.38
VRK1-204ENST00000555351 SYAP1Q96A49 352 aaPredicted RBP12.68□□□□□ -0.38
VRK1-204ENST00000555351 CCDC127Q96BQ5 260 aa12.68□□□□□ -0.38
VRK1-204ENST00000555351 LPIN3Q9BQK8 851 aa12.68□□□□□ -0.38
VRK1-204ENST00000555351 BCO2Q9BYV7 579 aa12.68□□□□□ -0.38
VRK1-204ENST00000555351 GZF1Q9H116 711 aaPredicted RBP12.68□□□□□ -0.38
VRK1-204ENST00000555351 TMLHEQ9NVH6 421 aa12.68□□□□□ -0.38
VRK1-204ENST00000555351 TRAF3IP3Q9Y228 551 aa12.68□□□□□ -0.38
VRK1-204ENST00000555351 MIA3Q5JRA6 1907 aa12.68□□□□□ -0.38
VRK1-204ENST00000555351 CACNA1HO95180 2353 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 ARNTLO00327 626 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 IKBKBO14920 756 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 CALUO43852 315 aaPredicted RBP12.67□□□□□ -0.38
VRK1-204ENST00000555351 CST3P01034 146 aaPredicted RBP12.67□□□□□ -0.38
VRK1-204ENST00000555351 F11P03951 625 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 GJA1P17302 382 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 GDI1P31150 447 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 VIPR2P41587 438 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 NLRP12P59046 1061 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 PLCB2Q00722 1185 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 DPYDQ12882 1025 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 TRPC3Q13507 836 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 GPR158Q5T848 1215 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 SCARA3Q6AZY7 606 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 TPRG1Q6ZUI0 275 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 OSTM1Q86WC4 334 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 SPATA2LQ8IUW3 424 aaPredicted RBP12.67□□□□□ -0.38
VRK1-204ENST00000555351 C1orf210Q8IVY1 113 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 YAF2Q8IY57 180 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 GUF1Q8N442 669 aaKnown RBP12.67□□□□□ -0.38
VRK1-204ENST00000555351 FSIP1Q8NA03 581 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 ST13P5Q8NFI4 369 aaPredicted RBP12.67□□□□□ -0.38
VRK1-204ENST00000555351 ZNF516Q92618 1163 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 SPATA17Q96L03 361 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 SYT15Q9BQS2 421 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 GTPBP4Q9BZE4 634 aaKnown RBP12.67□□□□□ -0.38
VRK1-204ENST00000555351 FOXQ1Q9C009 403 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 XYLT2Q9H1B5 865 aa12.67□□□□□ -0.38
VRK1-204ENST00000555351 C8orf33Q9H7E9 229 aaPredicted RBP12.67□□□□□ -0.38
VRK1-204ENST00000555351 KIF9Q9HAQ2 790 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms