RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 DDX43Q9NXZ2 648 aaKnown RBP11.46□□□□□ -0.57
TDP1-211ENST00000555178 BARX2Q9UMQ3 279 aaPredicted RBP11.46□□□□□ -0.57
TDP1-211ENST00000555178 PCDHB8Q9UN66 801 aa11.46□□□□□ -0.57
TDP1-211ENST00000555178 STXBP5LQ9Y2K9 1186 aa11.46□□□□□ -0.57
TDP1-211ENST00000555178 XIRP2A4UGR9 3374 aa11.46□□□□□ -0.58
TDP1-211ENST00000555178 PRUNE2Q8WUY3 3088 aa11.46□□□□□ -0.58
TDP1-211ENST00000555178 A8MXQ7 604 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 EIF3CLB5ME19 914 aaKnown RBP11.45□□□□□ -0.58
TDP1-211ENST00000555178 THAP12O43422 761 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 TACC1O75410 805 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 CYP11A1P05108 521 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 CCDC130P13994 396 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 FGFR3P22607 806 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 WARSP23381 471 aaKnown RBP11.45□□□□□ -0.58
TDP1-211ENST00000555178 DNAJB2P25686 324 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 MSNP26038 577 aaKnown RBP11.45□□□□□ -0.58
TDP1-211ENST00000555178 BMP8BP34820 402 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 CTNNB1P35222 781 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 ERVFC1P60507 584 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 MLLT1Q03111 559 aaPredicted RBP11.45□□□□□ -0.58
TDP1-211ENST00000555178 REXO1L1PQ8IX06 675 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 TDHQ8IZJ6 230 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 EIF3CQ99613 913 aaKnown RBP11.45□□□□□ -0.58
TDP1-211ENST00000555178 LACRTQ9GZZ8 138 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 CYP3A43Q9HB55 503 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 SPG21Q9NZD8 308 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 GTF3C4Q9UKN8 822 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 NENFQ9UMX5 172 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 COLQQ9Y215 455 aaPredicted RBP11.45□□□□□ -0.58
TDP1-211ENST00000555178 BZW2Q9Y6E2 419 aaKnown RBP11.45□□□□□ -0.58
TDP1-211ENST00000555178 GRM6O15303 877 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 VNN2O95498 520 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 CD19P15391 556 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 LAG3P18627 525 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 BMPR1AP36894 532 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 CACNA2D1P54289 1103 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 CDR2Q01850 454 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 MRPL58Q14197 206 aaKnown RBP11.45□□□□□ -0.58
TDP1-211ENST00000555178 OVOS1Q6IE37 1185 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 PAQR9Q6ZVX9 377 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 PKMYT1Q99640 499 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 MTIF3Q9H2K0 278 aaKnown RBP11.45□□□□□ -0.58
TDP1-211ENST00000555178 LZTFL1Q9NQ48 299 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 RNF216Q9NWF9 866 aaPredicted RBP11.45□□□□□ -0.58
TDP1-211ENST00000555178 NAGPAQ9UK23 515 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 DUSP10Q9Y6W6 482 aa11.45□□□□□ -0.58
TDP1-211ENST00000555178 TULP2O00295 520 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 LCA5LO95447 670 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 CCDC175P0C221 793 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 ODC1P11926 461 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 TNFAIP3P21580 790 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 IRS1P35568 1242 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 C2CD6Q53TS8 623 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 PPP1R26Q5T8A7 1209 aaPredicted RBP11.44□□□□□ -0.58
TDP1-211ENST00000555178 TTC9BQ8N6N2 239 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 STKLD1Q8NE28 680 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 ZNF606Q8WXB4 792 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 TMEM176AQ96HP8 235 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 SNX25Q9H3E2 840 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 CHST7Q9NS84 486 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 CHORDC1Q9UHD1 332 aaPredicted RBP11.44□□□□□ -0.58
TDP1-211ENST00000555178 CYTH4Q9UIA0 394 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 PCDHA13Q9Y5I0 950 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 GREB1Q4ZG55 1949 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 ZNF638Q14966 1978 aaKnown RBP11.44□□□□□ -0.58
TDP1-211ENST00000555178 SPTBN5Q9NRC6 3674 aaKnown RBP11.44□□□□□ -0.58
TDP1-211ENST00000555178 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.44□□□□□ -0.58
TDP1-211ENST00000555178 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.44□□□□□ -0.58
TDP1-211ENST00000555178 TBC1D4O60343 1298 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 BEST1O76090 585 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 CCDC172P0C7W6 258 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 ARHGAP25P42331 645 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 YWHAEP62258 255 aaKnown RBP11.44□□□□□ -0.58
TDP1-211ENST00000555178 BMS1Q14692 1282 aaKnown RBP11.44□□□□□ -0.58
TDP1-211ENST00000555178 MDH1BQ5I0G3 518 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 CCDC122Q5T0U0 273 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 LLGL2Q6P1M3 1020 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 DENND1BQ6P3S1 775 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 ALKBH5Q6P6C2 394 aaKnown RBP11.44□□□□□ -0.58
TDP1-211ENST00000555178 VPS52Q8N1B4 723 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 WDTC1Q8N5D0 677 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 UBA3Q8TBC4 463 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 FEZF2Q8TBJ5 459 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 SPPL3Q8TCT6 385 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 RIN2Q8WYP3 895 aaPredicted RBP11.44□□□□□ -0.58
TDP1-211ENST00000555178 CYFIP2Q96F07 1278 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 FAXDC2Q96IV6 333 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 HEXIM2Q96MH2 286 aaKnown RBP11.44□□□□□ -0.58
TDP1-211ENST00000555178 IRX2Q9BZI1 471 aaPredicted RBP11.44□□□□□ -0.58
TDP1-211ENST00000555178 CRISPLD1Q9H336 500 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 TJP2Q9UDY2 1190 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 PCDHA11Q9Y5I1 949 aa11.44□□□□□ -0.58
TDP1-211ENST00000555178 SF3B1O75533 1304 aaKnown RBP eCLIP11.44□□□□□ -0.584e-7■■■■■ 133.7
TDP1-211ENST00000555178 ATMINO43313 823 aaPredicted RBP11.43□□□□□ -0.58
TDP1-211ENST00000555178 GABBR2O75899 941 aa11.43□□□□□ -0.58
TDP1-211ENST00000555178 OAZ2O95190 189 aa11.43□□□□□ -0.58
TDP1-211ENST00000555178 PTPN1P18031 435 aaKnown RBP11.43□□□□□ -0.58
TDP1-211ENST00000555178 ARPP19P56211 112 aa11.43□□□□□ -0.58
TDP1-211ENST00000555178 YWHAHQ04917 246 aaPredicted RBP11.43□□□□□ -0.58
TDP1-211ENST00000555178 SPA17Q15506 151 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms