RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 ZCWPW1Q9H0M4 648 aa14.01□□□□□ -0.17
VPS29-211ENST00000553128 SLC32A1Q9H598 525 aa14.01□□□□□ -0.17
VPS29-211ENST00000553128 HSFX1Q9UBD0 423 aa14.01□□□□□ -0.17
VPS29-211ENST00000553128 UBQLN1Q9UMX0 589 aaKnown RBP14.01□□□□□ -0.17
VPS29-211ENST00000553128 WNT6Q9Y6F9 365 aa14.01□□□□□ -0.17
VPS29-211ENST00000553128 PCNX2A6NKB5 2137 aa14□□□□□ -0.17
VPS29-211ENST00000553128 ASH1LQ9NR48 2969 aaKnown RBP14□□□□□ -0.17
VPS29-211ENST00000553128 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14□□□□□ -0.17
VPS29-211ENST00000553128 K7EQS6 105 aa14□□□□□ -0.17
VPS29-211ENST00000553128 JAK2O60674 1132 aa14□□□□□ -0.17
VPS29-211ENST00000553128 TADA3O75528 432 aa14□□□□□ -0.17
VPS29-211ENST00000553128 REC8O95072 547 aa14□□□□□ -0.17
VPS29-211ENST00000553128 ODC1P11926 461 aa14□□□□□ -0.17
VPS29-211ENST00000553128 CYP3A5P20815 502 aa14□□□□□ -0.17
VPS29-211ENST00000553128 TUFMP49411 452 aaKnown RBP14□□□□□ -0.17
VPS29-211ENST00000553128 AMPD2Q01433 879 aa14□□□□□ -0.17
VPS29-211ENST00000553128 MCL1Q07820 350 aa14□□□□□ -0.17
VPS29-211ENST00000553128 SCAPQ12770 1279 aa14□□□□□ -0.17
VPS29-211ENST00000553128 MTF1Q14872 753 aa14□□□□□ -0.17
VPS29-211ENST00000553128 PDGFRLQ15198 375 aa14□□□□□ -0.17
VPS29-211ENST00000553128 TAF12Q16514 161 aa14□□□□□ -0.17
VPS29-211ENST00000553128 SDHAF4Q5VUM1 108 aa14□□□□□ -0.17
VPS29-211ENST00000553128 CC2D1AQ6P1N0 951 aaPredicted RBP14□□□□□ -0.17
VPS29-211ENST00000553128 TMEM92Q6UXU6 159 aa14□□□□□ -0.17
VPS29-211ENST00000553128 TTC30AQ86WT1 665 aa14□□□□□ -0.17
VPS29-211ENST00000553128 SFTPA1Q8IWL2 248 aa14□□□□□ -0.17
VPS29-211ENST00000553128 TMEFF1Q8IYR6 380 aa14□□□□□ -0.17
VPS29-211ENST00000553128 CCDC33Q8N5R6 958 aa14□□□□□ -0.17
VPS29-211ENST00000553128 USP33Q8TEY7 942 aa14□□□□□ -0.17
VPS29-211ENST00000553128 CNOT6LQ96LI5 555 aaKnown RBP14□□□□□ -0.17
VPS29-211ENST00000553128 CYP2S1Q96SQ9 504 aa14□□□□□ -0.17
VPS29-211ENST00000553128 DUS2Q9NX74 493 aaKnown RBP14□□□□□ -0.17
VPS29-211ENST00000553128 HAPLN1P10915 354 aaPredicted RBP13.99□□□□□ -0.17
VPS29-211ENST00000553128 MUTP22033 750 aa13.99□□□□□ -0.17
VPS29-211ENST00000553128 GUCY1B3Q02153 619 aa13.99□□□□□ -0.17
VPS29-211ENST00000553128 RAD51AP2Q09MP3 1159 aa13.99□□□□□ -0.17
VPS29-211ENST00000553128 LMAN2Q12907 356 aa13.99□□□□□ -0.17
VPS29-211ENST00000553128 ZNF77Q15935 545 aa13.99□□□□□ -0.17
VPS29-211ENST00000553128 ENOX2Q16206 610 aaKnown RBP13.99□□□□□ -0.17
VPS29-211ENST00000553128 EML3Q32P44 896 aa13.99□□□□□ -0.17
VPS29-211ENST00000553128 HAUS3Q68CZ6 603 aa13.99□□□□□ -0.17
VPS29-211ENST00000553128 RINT1Q6NUQ1 792 aa13.99□□□□□ -0.17
VPS29-211ENST00000553128 KCNK18Q7Z418 384 aa13.99□□□□□ -0.17
VPS29-211ENST00000553128 RAB44Q7Z6P3 723 aaPredicted RBP13.99□□□□□ -0.17
VPS29-211ENST00000553128 C11orf74Q86VG3 221 aa13.99□□□□□ -0.17
VPS29-211ENST00000553128 MON1AQ86VX9 555 aa13.99□□□□□ -0.17
VPS29-211ENST00000553128 CPA6Q8N4T0 437 aa13.99□□□□□ -0.17
VPS29-211ENST00000553128 TMEM161BQ8NDZ6 487 aa13.99□□□□□ -0.17
VPS29-211ENST00000553128 OR2I1PQ8NGU4 316 aa13.99□□□□□ -0.17
VPS29-211ENST00000553128 OLIG1Q8TAK6 271 aa13.99□□□□□ -0.17
VPS29-211ENST00000553128 OSCP1Q8WVF1 389 aa13.99□□□□□ -0.17
VPS29-211ENST00000553128 NUSAP1Q9BXS6 441 aaKnown RBP13.99□□□□□ -0.17
VPS29-211ENST00000553128 LINC00597Q9H2U6 94 aa13.99□□□□□ -0.17
VPS29-211ENST00000553128 KIF9Q9HAQ2 790 aa13.99□□□□□ -0.17
VPS29-211ENST00000553128 PLEKHA5Q9HAU0 1116 aa13.99□□□□□ -0.17
VPS29-211ENST00000553128 TMLHEQ9NVH6 421 aa13.99□□□□□ -0.17
VPS29-211ENST00000553128 ABI2Q9NYB9 513 aaPredicted RBP13.99□□□□□ -0.17
VPS29-211ENST00000553128 MAGED2Q9UNF1 606 aaPredicted RBP13.99□□□□□ -0.17
VPS29-211ENST00000553128 RBM19Q9Y4C8 960 aaKnown RBP13.99□□□□□ -0.17
VPS29-211ENST00000553128 FLNBO75369 2602 aaKnown RBP13.99□□□□□ -0.17
VPS29-211ENST00000553128 PTPRDP23468 1912 aa13.99□□□□□ -0.17
VPS29-211ENST00000553128 DENND4CQ5VZ89 1909 aa13.98□□□□□ -0.17
VPS29-211ENST00000553128 OBSL1O75147 1896 aa13.98□□□□□ -0.17
VPS29-211ENST00000553128 ANK1P16157 1881 aa13.98□□□□□ -0.17
VPS29-211ENST00000553128 PP2D1A8MPX8 630 aa13.98□□□□□ -0.17
VPS29-211ENST00000553128 CLDN3O15551 220 aa13.98□□□□□ -0.17
VPS29-211ENST00000553128 FAM189A1O60320 539 aa13.98□□□□□ -0.17
VPS29-211ENST00000553128 CYP11A1P05108 521 aa13.98□□□□□ -0.17
VPS29-211ENST00000553128 CLTAP09496 248 aa13.98□□□□□ -0.17
VPS29-211ENST00000553128 MAPTP10636 758 aaKnown RBP13.98□□□□□ -0.17
VPS29-211ENST00000553128 DDX6P26196 483 aaKnown RBP eCLIP13.98□□□□□ -0.17
VPS29-211ENST00000553128 OPRD1P41143 372 aa13.98□□□□□ -0.17
VPS29-211ENST00000553128 P2RY2P41231 377 aa13.98□□□□□ -0.17
VPS29-211ENST00000553128 MATR3P43243 847 aaKnown RBP eCLIP13.98□□□□□ -0.17
VPS29-211ENST00000553128 PPP2R3AQ06190 1150 aa13.98□□□□□ -0.17
VPS29-211ENST00000553128 MESP2Q0VG99 397 aa13.98□□□□□ -0.17
VPS29-211ENST00000553128 ZNF268Q14587 947 aaPredicted RBP13.98□□□□□ -0.17
VPS29-211ENST00000553128 NBR1Q14596 966 aa13.98□□□□□ -0.17
VPS29-211ENST00000553128 ZC2HC1CQ53FD0 456 aaPredicted RBP13.98□□□□□ -0.17
VPS29-211ENST00000553128 SPATA1Q5VX52 437 aa13.98□□□□□ -0.17
VPS29-211ENST00000553128 C9orf57Q5W0N0 161 aa13.98□□□□□ -0.17
VPS29-211ENST00000553128 C1orf186Q6ZWK4 172 aa13.98□□□□□ -0.17
VPS29-211ENST00000553128 SYT12Q8IV01 421 aa13.98□□□□□ -0.17
VPS29-211ENST00000553128 C4orf32Q8N8J7 132 aa13.98□□□□□ -0.17
VPS29-211ENST00000553128 NSUN7Q8NE18 718 aaKnown RBP13.98□□□□□ -0.17
VPS29-211ENST00000553128 LRWD1Q9UFC0 647 aa13.98□□□□□ -0.17
VPS29-211ENST00000553128 CIZ1Q9ULV3 898 aaPredicted RBP13.98□□□□□ -0.17
VPS29-211ENST00000553128 TNRC6BQ9UPQ9 1833 aaKnown RBP13.98□□□□□ -0.17
VPS29-211ENST00000553128 UPK3BL1B0FP48 263 aa13.97□□□□□ -0.17
VPS29-211ENST00000553128 UPK3BL2E5RIL1 263 aa13.97□□□□□ -0.17
VPS29-211ENST00000553128 TNFRSF10BO14763 440 aa13.97□□□□□ -0.17
VPS29-211ENST00000553128 SEC24BO95487 1268 aa13.97□□□□□ -0.17
VPS29-211ENST00000553128 CHRM1P11229 460 aaPredicted RBP13.97□□□□□ -0.17
VPS29-211ENST00000553128 ITPKAP23677 461 aa13.97□□□□□ -0.17
VPS29-211ENST00000553128 STRN3Q13033 797 aa13.97□□□□□ -0.17
VPS29-211ENST00000553128 USP4Q13107 963 aa13.97□□□□□ -0.17
VPS29-211ENST00000553128 CRY1Q16526 586 aa13.97□□□□□ -0.17
VPS29-211ENST00000553128 ME3Q16798 604 aa13.97□□□□□ -0.17
VPS29-211ENST00000553128 GAB4Q2WGN9 574 aa13.97□□□□□ -0.17
VPS29-211ENST00000553128 JADE1Q6IE81 842 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms