RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 GTF3C4Q9UKN8 822 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 SNX9Q9Y5X1 595 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 K7ESF4 209 aa12.34□□□□□ -0.43
NEK3-204ENST00000552973 EXTL3O43909 919 aa12.34□□□□□ -0.43
NEK3-204ENST00000552973 HUS1O60921 280 aa12.34□□□□□ -0.43
NEK3-204ENST00000552973 LDHAP00338 332 aaKnown RBP12.34□□□□□ -0.43
NEK3-204ENST00000552973 GARTP22102 1010 aa12.34□□□□□ -0.43
NEK3-204ENST00000552973 AVPR1AP37288 418 aa12.34□□□□□ -0.43
NEK3-204ENST00000552973 PNPLA4P41247 253 aa12.34□□□□□ -0.43
NEK3-204ENST00000552973 ATXN1P54253 815 aaKnown RBP12.34□□□□□ -0.43
NEK3-204ENST00000552973 SMARCB1Q12824 385 aa12.34□□□□□ -0.43
NEK3-204ENST00000552973 SLC39A14Q15043 492 aa12.34□□□□□ -0.43
NEK3-204ENST00000552973 ITPRIPL2Q3MIP1 535 aa12.34□□□□□ -0.43
NEK3-204ENST00000552973 DGKKQ5KSL6 1271 aa12.34□□□□□ -0.43
NEK3-204ENST00000552973 C1orf228Q6PIY5 440 aa12.34□□□□□ -0.43
NEK3-204ENST00000552973 GPR161Q8N6U8 529 aaKnown RBP12.34□□□□□ -0.43
NEK3-204ENST00000552973 GLIS3Q8NEA6 775 aa12.34□□□□□ -0.43
NEK3-204ENST00000552973 RIN3Q8TB24 985 aa12.34□□□□□ -0.43
NEK3-204ENST00000552973 CACTINQ8WUQ7 758 aaKnown RBP12.34□□□□□ -0.43
NEK3-204ENST00000552973 USP13Q92995 863 aaPredicted RBP12.34□□□□□ -0.43
NEK3-204ENST00000552973 MTMR12Q9C0I1 747 aa12.34□□□□□ -0.43
NEK3-204ENST00000552973 EBF3Q9H4W6 596 aa12.34□□□□□ -0.43
NEK3-204ENST00000552973 MTMR6Q9Y217 621 aa12.34□□□□□ -0.43
NEK3-204ENST00000552973 MIA3Q5JRA6 1907 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 FRMD3A2A2Y4 597 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 DCDC2BA2VCK2 349 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 OTOL1A6NHN0 477 aaPredicted RBP12.33□□□□□ -0.44
NEK3-204ENST00000552973 TMEM191BP0C7N4 346 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 CSH1P0DML2 217 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 CSH2P0DML3 217 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 ARSAP15289 507 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 WEE1P30291 646 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 PXNP49023 591 aaPredicted RBP12.33□□□□□ -0.44
NEK3-204ENST00000552973 RBP5P82980 135 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 PLCB2Q00722 1185 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 MYL7Q01449 175 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 RUNX3Q13761 415 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 CCINQ13939 588 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 NFE2Q16621 373 aaPredicted RBP12.33□□□□□ -0.44
NEK3-204ENST00000552973 INTS6LQ5JSJ4 861 aaKnown RBP12.33□□□□□ -0.44
NEK3-204ENST00000552973 PKN3Q6P5Z2 889 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 LONP2Q86WA8 852 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 CXorf38Q8TB03 319 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 MRPS31Q92665 395 aaKnown RBP12.33□□□□□ -0.44
NEK3-204ENST00000552973 FAM83CQ9BQN1 747 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 ACBD6Q9BR61 282 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 TMEM206Q9H813 350 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 TRPC7Q9HCX4 862 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 HPS4Q9NQG7 708 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 OLFML3Q9NRN5 406 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 POLR3BQ9NW08 1133 aaPredicted RBP12.33□□□□□ -0.44
NEK3-204ENST00000552973 TFIP11Q9UBB9 837 aaKnown RBP12.33□□□□□ -0.44
NEK3-204ENST00000552973 SIX4Q9UIU6 781 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.33□□□□□ -0.44
NEK3-204ENST00000552973 VPS13AQ96RL7 3174 aa12.33□□□□□ -0.44
NEK3-204ENST00000552973 PDCD11Q14690 1871 aaKnown RBP12.32□□□□□ -0.44
NEK3-204ENST00000552973 ATP2C2O75185 946 aa12.32□□□□□ -0.44
NEK3-204ENST00000552973 LMNB2Q03252 620 aa12.32□□□□□ -0.44
NEK3-204ENST00000552973 STK38Q15208 465 aa12.32□□□□□ -0.44
NEK3-204ENST00000552973 FOXD4L5Q5VV16 416 aaPredicted RBP12.32□□□□□ -0.44
NEK3-204ENST00000552973 NAIF1Q69YI7 327 aaPredicted RBP12.32□□□□□ -0.44
NEK3-204ENST00000552973 LAIR1Q6GTX8 287 aa12.32□□□□□ -0.44
NEK3-204ENST00000552973 FSTL4Q6MZW2 842 aa12.32□□□□□ -0.44
NEK3-204ENST00000552973 CC2D1AQ6P1N0 951 aaPredicted RBP12.32□□□□□ -0.44
NEK3-204ENST00000552973 MON1AQ86VX9 555 aa12.32□□□□□ -0.44
NEK3-204ENST00000552973 CBWD2Q8IUF1 395 aa12.32□□□□□ -0.44
NEK3-204ENST00000552973 SPATA2LQ8IUW3 424 aaPredicted RBP12.32□□□□□ -0.44
NEK3-204ENST00000552973 SCN4BQ8IWT1 228 aa12.32□□□□□ -0.44
NEK3-204ENST00000552973 CCDC65Q8IXS2 484 aa12.32□□□□□ -0.44
NEK3-204ENST00000552973 ADGRF2Q8IZF7 708 aa12.32□□□□□ -0.44
NEK3-204ENST00000552973 GPD1LQ8N335 351 aa12.32□□□□□ -0.44
NEK3-204ENST00000552973 LRRC52Q8N7C0 313 aa12.32□□□□□ -0.44
NEK3-204ENST00000552973 OR5B17Q8NGF7 314 aa12.32□□□□□ -0.44
NEK3-204ENST00000552973 FOXD4L4Q8WXT5 416 aaPredicted RBP12.32□□□□□ -0.44
NEK3-204ENST00000552973 CYP2S1Q96SQ9 504 aa12.32□□□□□ -0.44
NEK3-204ENST00000552973 TDP1Q9NUW8 608 aa12.32□□□□□ -0.44
NEK3-204ENST00000552973 ITGA11Q9UKX5 1188 aa12.32□□□□□ -0.44
NEK3-204ENST00000552973 CDV3Q9UKY7 258 aaKnown RBP12.32□□□□□ -0.44
NEK3-204ENST00000552973 R3HCC1Q9Y3T6 440 aaKnown RBP12.32□□□□□ -0.44
NEK3-204ENST00000552973 MYH11P35749 1972 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 PRR5-ARHGAP8B1AHC4 643 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 STX6O43752 255 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 TADA3O75528 432 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 EGFP01133 1207 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 RETP07949 1114 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 PDGFRBP09619 1106 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 LMO2P25791 158 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 GALK1P51570 392 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 PSMC1P62191 440 aaKnown RBP12.31□□□□□ -0.44
NEK3-204ENST00000552973 RPL10AP62906 217 aaKnown RBP12.31□□□□□ -0.44
NEK3-204ENST00000552973 ARHGAP8P85298 464 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 GRSF1Q12849 480 aaKnown RBP eCLIP12.31□□□□□ -0.44
NEK3-204ENST00000552973 ALCAMQ13740 583 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 SOWAHAQ2M3V2 549 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 CEP68Q76N32 757 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.31□□□□□ -0.44
NEK3-204ENST00000552973 TMEM86AQ8N2M4 240 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 TOP6BLQ8N6T0 577 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 RDH13Q8NBN7 331 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 DHX58Q96C10 678 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms