RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 PIAS1O75925 651 aa11.72□□□□□ -0.53
CUX1-212ENST00000547394 IFNB1P01574 187 aa11.72□□□□□ -0.53
CUX1-212ENST00000547394 PDGFRBP09619 1106 aa11.72□□□□□ -0.53
CUX1-212ENST00000547394 CYP2C9P11712 490 aa11.72□□□□□ -0.53
CUX1-212ENST00000547394 KRT3P12035 628 aa11.72□□□□□ -0.53
CUX1-212ENST00000547394 AP3M2P53677 418 aa11.72□□□□□ -0.53
CUX1-212ENST00000547394 ITGA8P53708 1063 aa11.72□□□□□ -0.53
CUX1-212ENST00000547394 IFI35P80217 286 aaPredicted RBP11.72□□□□□ -0.53
CUX1-212ENST00000547394 PLCB3Q01970 1234 aa11.72□□□□□ -0.53
CUX1-212ENST00000547394 ENPEPQ07075 957 aa11.72□□□□□ -0.53
CUX1-212ENST00000547394 FAM110CQ1W6H9 321 aa11.72□□□□□ -0.53
CUX1-212ENST00000547394 ZNF618Q5T7W0 954 aa11.72□□□□□ -0.53
CUX1-212ENST00000547394 KCNN1Q92952 543 aa11.72□□□□□ -0.53
CUX1-212ENST00000547394 PSD3Q9NYI0 1048 aa11.72□□□□□ -0.53
CUX1-212ENST00000547394 NME7Q9Y5B8 376 aa11.72□□□□□ -0.53
CUX1-212ENST00000547394 PASKQ96RG2 1323 aa11.71□□□□□ -0.53
CUX1-212ENST00000547394 A0A1B0GUA9 196 aa11.71□□□□□ -0.53
CUX1-212ENST00000547394 MYADML2A6NDP7 307 aa11.71□□□□□ -0.53
CUX1-212ENST00000547394 MCF2P10911 925 aa11.71□□□□□ -0.53
CUX1-212ENST00000547394 CCT5P48643 541 aa11.71□□□□□ -0.53
CUX1-212ENST00000547394 RABGGTBP53611 331 aa11.71□□□□□ -0.53
CUX1-212ENST00000547394 EXOC8Q8IYI6 725 aa11.71□□□□□ -0.53
CUX1-212ENST00000547394 CCDC33Q8N5R6 958 aa11.71□□□□□ -0.53
CUX1-212ENST00000547394 C7orf31Q8N865 590 aa11.71□□□□□ -0.53
CUX1-212ENST00000547394 HSPH1Q92598 858 aa11.71□□□□□ -0.53
CUX1-212ENST00000547394 DPEP3Q9H4B8 488 aa11.71□□□□□ -0.53
CUX1-212ENST00000547394 PPANQ9NQ55 473 aaKnown RBP11.71□□□□□ -0.53
CUX1-212ENST00000547394 AAASQ9NRG9 546 aa11.71□□□□□ -0.53
CUX1-212ENST00000547394 PIN4Q9Y237 131 aaKnown RBP11.71□□□□□ -0.53
CUX1-212ENST00000547394 SCINQ9Y6U3 715 aa11.71□□□□□ -0.53
CUX1-212ENST00000547394 TCRBV5S1A1TA0A578 114 aa11.71□□□□□ -0.54
CUX1-212ENST00000547394 GOLGA8MH3BSY2 632 aa11.71□□□□□ -0.54
CUX1-212ENST00000547394 PPFIA2O75334 1257 aa11.71□□□□□ -0.54
CUX1-212ENST00000547394 CILPO75339 1184 aa11.71□□□□□ -0.54
CUX1-212ENST00000547394 SLC1A1P43005 524 aa11.71□□□□□ -0.54
CUX1-212ENST00000547394 ATP11AP98196 1134 aa11.71□□□□□ -0.54
CUX1-212ENST00000547394 KLF1Q13351 362 aaPredicted RBP11.71□□□□□ -0.54
CUX1-212ENST00000547394 CYP1B1Q16678 543 aa11.71□□□□□ -0.54
CUX1-212ENST00000547394 C15orf59Q2T9L4 293 aaPredicted RBP11.71□□□□□ -0.54
CUX1-212ENST00000547394 BCAS4Q8TDM0 211 aa11.71□□□□□ -0.54
CUX1-212ENST00000547394 MRRFQ96E11 262 aaKnown RBP11.71□□□□□ -0.54
CUX1-212ENST00000547394 TMEM176AQ96HP8 235 aa11.71□□□□□ -0.54
CUX1-212ENST00000547394 B3GNT5Q9BYG0 378 aa11.71□□□□□ -0.54
CUX1-212ENST00000547394 TXLNGYQ9BZA5 131 aa11.71□□□□□ -0.54
CUX1-212ENST00000547394 TRIM6Q9C030 488 aaPredicted RBP11.71□□□□□ -0.54
CUX1-212ENST00000547394 LRRC19Q9H756 370 aa11.71□□□□□ -0.54
CUX1-212ENST00000547394 CTNNAL1Q9UBT7 734 aa11.71□□□□□ -0.54
CUX1-212ENST00000547394 IP6K2Q9UHH9 426 aa11.71□□□□□ -0.54
CUX1-212ENST00000547394 CEP83Q9Y592 693 aa11.71□□□□□ -0.54
CUX1-212ENST00000547394 ANK1P16157 1881 aa11.71□□□□□ -0.54
CUX1-212ENST00000547394 RBM47A0AV96 593 aaKnown RBP11.7□□□□□ -0.54
CUX1-212ENST00000547394 MEIS3P2A8K0S8 358 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 BANF1O75531 89 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 IL18RAPO95256 599 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 CALB1P05937 261 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 CALCOCO2Q13137 446 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 SURF1Q15526 300 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 KYNUQ16719 465 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 LONRF1Q17RB8 773 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 FAM102AQ5T9C2 384 aaPredicted RBP11.7□□□□□ -0.54
CUX1-212ENST00000547394 DENND2CQ68D51 928 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 SLITRK1Q96PX8 696 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 ADPGKQ9BRR6 497 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 TMEM121Q9BTD3 319 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 BCO2Q9BYV7 579 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 MAGEB5Q9BZ81 275 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 ADAMTS10Q9H324 1103 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 GPATCH2LQ9NWQ4 482 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 SLC5A4Q9NY91 659 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 ZNF148Q9UQR1 794 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 E5RJQ4 531 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 CTSHP09668 335 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 HSPA6P17066 643 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 GAD2Q05329 585 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 MMRN1Q13201 1228 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 TRNP1Q6NT89 227 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 C9orf72Q96LT7 481 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 PLVAPQ9BX97 442 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 ARHGAP39Q9C0H5 1083 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 MIS12Q9H081 205 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 PARP2Q9UGN5 583 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 TSPAN16Q9UKR8 245 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 PPME1Q9Y570 386 aa11.7□□□□□ -0.54
CUX1-212ENST00000547394 PODXLO00592 558 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 GPR32O75388 356 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 LRCH4O75427 683 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 RECQL4O94761 1208 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 IVDP26440 423 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 CTGFP29279 349 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 PPP1R26Q5T8A7 1209 aaPredicted RBP11.69□□□□□ -0.54
CUX1-212ENST00000547394 XYLT1Q86Y38 959 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 KATNAL2Q8IYT4 538 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 PABPC3Q9H361 631 aaKnown RBP11.69□□□□□ -0.54
CUX1-212ENST00000547394 PSTPIP1O43586 416 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 ATF2P15336 505 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 FNTAP49354 379 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 AFF1P51825 1210 aaKnown RBP11.69□□□□□ -0.54
CUX1-212ENST00000547394 MFSD10Q14728 455 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 P3H1Q32P28 736 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 PPP1R15BQ5SWA1 713 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms