RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 IGBP1P78318 339 aa15.83■□□□□ 0.13
USP28-214ENST00000545540 TRPC3Q13507 836 aa15.83■□□□□ 0.13
USP28-214ENST00000545540 IGDCC3Q8IVU1 814 aa15.83■□□□□ 0.13
USP28-214ENST00000545540 ALLCQ8N6M5 410 aa15.83■□□□□ 0.13
USP28-214ENST00000545540 UBA3Q8TBC4 463 aa15.83■□□□□ 0.13
USP28-214ENST00000545540 PYROXD1Q8WU10 500 aa15.83■□□□□ 0.13
USP28-214ENST00000545540 GPRASP2Q96D09 838 aa15.83■□□□□ 0.13
USP28-214ENST00000545540 PICK1Q9NRD5 415 aa15.83■□□□□ 0.13
USP28-214ENST00000545540 NR2E3Q9Y5X4 410 aa15.83■□□□□ 0.13
USP28-214ENST00000545540 KIAA1217Q5T5P2 1943 aa15.83■□□□□ 0.12
USP28-214ENST00000545540 SLC8A1P32418 973 aa15.83■□□□□ 0.12
USP28-214ENST00000545540 PTPN20Q4JDL3 420 aa15.83■□□□□ 0.12
USP28-214ENST00000545540 ZNF280CQ8ND82 737 aa15.83■□□□□ 0.12
USP28-214ENST00000545540 FBF1Q8TES7 1133 aa15.83■□□□□ 0.12
USP28-214ENST00000545540 LRRC37BQ96QE4 947 aa15.83■□□□□ 0.12
USP28-214ENST00000545540 WDR83Q9BRX9 315 aaKnown RBP15.83■□□□□ 0.12
USP28-214ENST00000545540 PORCNQ9H237 461 aa15.83■□□□□ 0.12
USP28-214ENST00000545540 hCG_1818297A0A087WSY0 165 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 GSTA1P08263 222 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 PTPRAP18433 802 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 GMPSP49915 693 aaPredicted RBP15.82■□□□□ 0.12
USP28-214ENST00000545540 SEPT7Q16181 437 aaKnown RBP15.82■□□□□ 0.12
USP28-214ENST00000545540 MTDHQ86UE4 582 aaKnown RBP15.82■□□□□ 0.12
USP28-214ENST00000545540 LRRC6Q86X45 466 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 FBXO36Q8NEA4 188 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 RFWD2Q8NHY2 731 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 TTC8Q8TAM2 541 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 PTPRN2Q92932 1015 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 YY1AP1Q9H869 796 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 CLUHO75153 1309 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 ENTPD5O75356 428 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 ZBTB7AO95365 584 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 PGK2P07205 417 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 MAN1A1P33908 653 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 CETN2P41208 172 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 TGFB2P61812 414 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 ZNF268Q14587 947 aaPredicted RBP15.82■□□□□ 0.12
USP28-214ENST00000545540 HIF1AQ16665 826 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 TAF1BQ53T94 588 aaPredicted RBP15.82■□□□□ 0.12
USP28-214ENST00000545540 WDR78Q5VTH9 848 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 PHF13Q86YI8 300 aaPredicted RBP15.82■□□□□ 0.12
USP28-214ENST00000545540 RCOR2Q8IZ40 523 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 TRIM11Q96F44 468 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 GPATCH2LQ9NWQ4 482 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 INO80B-WBP1J3KQ70 363 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 GM2AP17900 193 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 CDKN2BP42772 138 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 LACTBP83111 547 aaPredicted RBP15.82■□□□□ 0.12
USP28-214ENST00000545540 TFDP3Q5H9I0 405 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 OTOAQ7RTW8 1153 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 ZNF570Q96NI8 536 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 PCYT2Q99447 389 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 INO80BQ9C086 356 aaPredicted RBP15.82■□□□□ 0.12
USP28-214ENST00000545540 METTL5Q9NRN9 209 aaKnown RBP15.82■□□□□ 0.12
USP28-214ENST00000545540 SCINQ9Y6U3 715 aa15.82■□□□□ 0.12
USP28-214ENST00000545540 TMEM63AO94886 807 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 PSMC1P62191 440 aaKnown RBP15.81■□□□□ 0.12
USP28-214ENST00000545540 EAPPQ56P03 285 aaPredicted RBP15.81■□□□□ 0.12
USP28-214ENST00000545540 MDH1BQ5I0G3 518 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 RNASEH2BQ5TBB1 312 aaKnown RBP15.81■□□□□ 0.12
USP28-214ENST00000545540 ANGEL2Q5VTE6 544 aaKnown RBP15.81■□□□□ 0.12
USP28-214ENST00000545540 C1orf228Q6PIY5 440 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 TCP10LQ8TDR4 215 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 PIWIL1Q96J94 861 aaKnown RBP15.81■□□□□ 0.12
USP28-214ENST00000545540 TWNKQ96RR1 684 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 CGRRF1Q99675 332 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 MAGEB5Q9BZ81 275 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 ZNF395Q9H8N7 513 aaPredicted RBP15.81■□□□□ 0.12
USP28-214ENST00000545540 EURLQ9NYK6 297 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 VCPP55072 806 aaKnown RBP15.81■□□□□ 0.12
USP28-214ENST00000545540 CAV1Q03135 178 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 SPARCL1Q14515 664 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 PPP1R21Q6ZMI0 780 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 SYDE1Q6ZW31 735 aaPredicted RBP15.81■□□□□ 0.12
USP28-214ENST00000545540 ZNF677Q86XU0 584 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 RFX6Q8HWS3 928 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 AGBL3Q8NEM8 1001 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 RSAD2Q8WXG1 361 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 CPXM1Q96SM3 734 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 SLC24A3Q9HC58 644 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 ARHGEF3Q9NR81 526 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 FBXO6Q9NRD1 293 aaPredicted RBP15.81■□□□□ 0.12
USP28-214ENST00000545540 ZC3H11AO75152 810 aaKnown RBP eCLIP15.81■□□□□ 0.127e-6■■■■■ 33.7
USP28-214ENST00000545540 KRT3P12035 628 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 RPL22P35268 128 aaKnown RBP15.81■□□□□ 0.12
USP28-214ENST00000545540 CPA2P48052 419 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 GNPTABQ3T906 1256 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 EEF1DP3Q658K8 133 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 PALM2Q8IXS6 379 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 TMEM174Q8WUU8 243 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 CPT1BQ92523 772 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 TTC17Q96AE7 1141 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 C17orf75Q9HAS0 396 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 PIH1D1Q9NWS0 290 aaKnown RBP15.81■□□□□ 0.12
USP28-214ENST00000545540 STK32BQ9NY57 414 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 LGALS13Q9UHV8 139 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 SUFUQ9UMX1 484 aa15.81■□□□□ 0.12
USP28-214ENST00000545540 CFAP69A5D8W1 941 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 SPATA31C2B4DYI2 1134 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 LRCH4O75427 683 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms