RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 GIPC2Q8TF65 315 aa14.1□□□□□ -0.15
RTN3-212ENST00000543123 MRPS31Q92665 395 aaKnown RBP14.1□□□□□ -0.15
RTN3-212ENST00000543123 DHX58Q96C10 678 aa14.1□□□□□ -0.15
RTN3-212ENST00000543123 MKNK1Q9BUB5 465 aa14.1□□□□□ -0.15
RTN3-212ENST00000543123 MTMR12Q9C0I1 747 aa14.1□□□□□ -0.15
RTN3-212ENST00000543123 PCIF1Q9H4Z3 704 aa14.1□□□□□ -0.15
RTN3-212ENST00000543123 KIF9Q9HAQ2 790 aa14.1□□□□□ -0.15
RTN3-212ENST00000543123 LMAN1LQ9HAT1 526 aa14.1□□□□□ -0.15
RTN3-212ENST00000543123 PDE11AQ9HCR9 933 aa14.1□□□□□ -0.15
RTN3-212ENST00000543123 DDX43Q9NXZ2 648 aaKnown RBP14.1□□□□□ -0.15
RTN3-212ENST00000543123 L1RE1Q9UN81 338 aa14.1□□□□□ -0.15
RTN3-212ENST00000543123 SNX9Q9Y5X1 595 aa14.1□□□□□ -0.15
RTN3-212ENST00000543123 SLC38A8A6NNN8 435 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 PRPF40AO75400 957 aaKnown RBP14.09□□□□□ -0.15
RTN3-212ENST00000543123 SNRPFP62306 86 aaKnown RBP14.09□□□□□ -0.15
RTN3-212ENST00000543123 CYP4F8P98187 520 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 FZD5Q13467 585 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 E2F4Q16254 413 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 INTS6LQ5JSJ4 861 aaKnown RBP14.09□□□□□ -0.15
RTN3-212ENST00000543123 DGKKQ5KSL6 1271 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 FAM26FQ5R3K3 315 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 ATL3Q6DD88 541 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 DPH6Q7L8W6 267 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 HS2ST1Q7LGA3 356 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 ERMP1Q7Z2K6 904 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 LRRTM3Q86VH5 581 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 WDR49Q8IV35 697 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 CMTM8Q8IZV2 173 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 GPR161Q8N6U8 529 aaKnown RBP14.09□□□□□ -0.15
RTN3-212ENST00000543123 NELL1Q92832 810 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 RSPRY1Q96DX4 576 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 FUBP3Q96I24 572 aaKnown RBP eCLIP14.09□□□□□ -0.15
RTN3-212ENST00000543123 FGFBP2Q9BYJ0 223 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 EPC1Q9H2F5 836 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 INTS13Q9NVM9 706 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 FAM13BQ9NYF5 915 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 HSPBP1Q9NZL4 362 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 NCDNQ9UBB6 729 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 TFIP11Q9UBB9 837 aaKnown RBP14.09□□□□□ -0.15
RTN3-212ENST00000543123 OTOGLQ3ZCN5 2332 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 NCANO14594 1321 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 DCHS1Q96JQ0 3298 aa14.09□□□□□ -0.15
RTN3-212ENST00000543123 MYBPHLA2RUH7 354 aa14.08□□□□□ -0.16
RTN3-212ENST00000543123 SHISA7A6NL88 538 aa14.08□□□□□ -0.16
RTN3-212ENST00000543123 SPECC1L-ADORA2AF8WAN1 911 aa14.08□□□□□ -0.16
RTN3-212ENST00000543123 PRAMEF12O95522 483 aa14.08□□□□□ -0.16
RTN3-212ENST00000543123 ZSCAN22P10073 491 aaPredicted RBP14.08□□□□□ -0.16
RTN3-212ENST00000543123 CTHP32929 405 aa14.08□□□□□ -0.16
RTN3-212ENST00000543123 ME1P48163 572 aa14.08□□□□□ -0.16
RTN3-212ENST00000543123 WNT7BP56706 349 aa14.08□□□□□ -0.16
RTN3-212ENST00000543123 NLRP12P59046 1061 aa14.08□□□□□ -0.16
RTN3-212ENST00000543123 AMPD2Q01433 879 aa14.08□□□□□ -0.16
RTN3-212ENST00000543123 MAPRE1Q15691 268 aaKnown RBP14.08□□□□□ -0.16
RTN3-212ENST00000543123 ITPRIPL2Q3MIP1 535 aa14.08□□□□□ -0.16
RTN3-212ENST00000543123 CFAP221Q4G0U5 840 aa14.08□□□□□ -0.16
RTN3-212ENST00000543123 C4orf50Q6ZRC1 276 aa14.08□□□□□ -0.16
RTN3-212ENST00000543123 SPATA2LQ8IUW3 424 aaPredicted RBP14.08□□□□□ -0.16
RTN3-212ENST00000543123 SPEM1Q8N4L4 309 aa14.08□□□□□ -0.16
RTN3-212ENST00000543123 SUMF1Q8NBK3 374 aa14.08□□□□□ -0.16
RTN3-212ENST00000543123 ZSWIM2Q8NEG5 633 aa14.08□□□□□ -0.16
RTN3-212ENST00000543123 EXOC4Q96A65 974 aa14.08□□□□□ -0.16
RTN3-212ENST00000543123 TRMT2BQ96GJ1 504 aaKnown RBP14.08□□□□□ -0.16
RTN3-212ENST00000543123 HPDLQ96IR7 371 aa14.08□□□□□ -0.16
RTN3-212ENST00000543123 FNBP1Q96RU3 617 aa14.08□□□□□ -0.16
RTN3-212ENST00000543123 PI4K2AQ9BTU6 479 aa14.08□□□□□ -0.16
RTN3-212ENST00000543123 IL21Q9HBE4 155 aa14.08□□□□□ -0.16
RTN3-212ENST00000543123 CGNQ9P2M7 1197 aaKnown RBP14.08□□□□□ -0.16
RTN3-212ENST00000543123 CFAP45Q9UL16 551 aa14.08□□□□□ -0.16
RTN3-212ENST00000543123 RAB23Q9ULC3 237 aa14.08□□□□□ -0.16
RTN3-212ENST00000543123 SMG5Q9UPR3 1016 aaKnown RBP14.08□□□□□ -0.16
RTN3-212ENST00000543123 LILRB5O75023 590 aa14.07□□□□□ -0.16
RTN3-212ENST00000543123 CHRNB1P11230 501 aa14.07□□□□□ -0.16
RTN3-212ENST00000543123 CXCL12P48061 93 aa14.07□□□□□ -0.16
RTN3-212ENST00000543123 SNRNP35Q16560 246 aaKnown RBP14.07□□□□□ -0.16
RTN3-212ENST00000543123 CC2D1AQ6P1N0 951 aaPredicted RBP14.07□□□□□ -0.16
RTN3-212ENST00000543123 SHC4Q6S5L8 630 aa14.07□□□□□ -0.16
RTN3-212ENST00000543123 UNC13DQ70J99 1090 aa14.07□□□□□ -0.16
RTN3-212ENST00000543123 CBWD2Q8IUF1 395 aa14.07□□□□□ -0.16
RTN3-212ENST00000543123 KIAA2013Q8IYS2 634 aa14.07□□□□□ -0.16
RTN3-212ENST00000543123 SYNPOQ8N3V7 929 aa14.07□□□□□ -0.16
RTN3-212ENST00000543123 FSIP1Q8NA03 581 aa14.07□□□□□ -0.16
RTN3-212ENST00000543123 CXorf38Q8TB03 319 aa14.07□□□□□ -0.16
RTN3-212ENST00000543123 ZNF507Q8TCN5 953 aa14.07□□□□□ -0.16
RTN3-212ENST00000543123 CEP295NLQ96MC4 621 aa14.07□□□□□ -0.16
RTN3-212ENST00000543123 C7orf25Q9BPX7 421 aa14.07□□□□□ -0.16
RTN3-212ENST00000543123 SLC46A2Q9BY10 475 aa14.07□□□□□ -0.16
RTN3-212ENST00000543123 TDP1Q9NUW8 608 aa14.07□□□□□ -0.16
RTN3-212ENST00000543123 EHD2Q9NZN4 543 aa14.07□□□□□ -0.16
RTN3-212ENST00000543123 SIX4Q9UIU6 781 aa14.07□□□□□ -0.16
RTN3-212ENST00000543123 MAGED2Q9UNF1 606 aaPredicted RBP14.07□□□□□ -0.16
RTN3-212ENST00000543123 GABRDO14764 452 aa14.06□□□□□ -0.16
RTN3-212ENST00000543123 POLR2DO15514 142 aaKnown RBP14.06□□□□□ -0.16
RTN3-212ENST00000543123 NOL4O94818 638 aa14.06□□□□□ -0.16
RTN3-212ENST00000543123 F13A1P00488 732 aa14.06□□□□□ -0.16
RTN3-212ENST00000543123 HMGA1P17096 107 aaKnown RBP14.06□□□□□ -0.16
RTN3-212ENST00000543123 ACAT1P24752 427 aaKnown RBP14.06□□□□□ -0.16
RTN3-212ENST00000543123 MAGEA11P43364 429 aa14.06□□□□□ -0.16
RTN3-212ENST00000543123 PDE6CP51160 858 aa14.06□□□□□ -0.16
RTN3-212ENST00000543123 CDR1P51861 262 aa14.06□□□□□ -0.16
RTN3-212ENST00000543123 ZNF268Q14587 947 aaPredicted RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms