RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 AUHQ13825 339 aaKnown RBP10.4□□□□□ -0.74
SS18-205ENST00000542420 CCDC142Q17RM4 750 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 TMEM132AQ24JP5 1023 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 DUSP28Q4G0W2 176 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 MTHFD1LQ6UB35 978 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 TADA2BQ86TJ2 420 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 TDRPQ86YL5 185 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 TMEM176AQ96HP8 235 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 MCEEQ96PE7 176 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 XPO6Q96QU8 1125 aaKnown RBP10.4□□□□□ -0.74
SS18-205ENST00000542420 C16orf70Q9BSU1 422 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.4□□□□□ -0.74
SS18-205ENST00000542420 SLC5A4Q9NY91 659 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 BARX2Q9UMQ3 279 aaPredicted RBP10.4□□□□□ -0.74
SS18-205ENST00000542420 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.4□□□□□ -0.74
SS18-205ENST00000542420 PTPN22Q9Y2R2 807 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 A0A1B0GUA9 196 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 LACTBL1A8MY62 500 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 GPR25O00155 361 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 SHBGP04278 402 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 ERBB2P04626 1255 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 CXCL8P10145 99 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 KRT3P12035 628 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 AXLP30530 894 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 HPDP32754 393 aaPredicted RBP10.4□□□□□ -0.74
SS18-205ENST00000542420 GJA5P36382 358 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 SCNN1AP37088 669 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 ADCY8P40145 1251 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 CDKN2BP42772 138 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 CLCN3P51790 818 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 SLC18A1P54219 525 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 GRB14Q14449 540 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 TMEM132DQ14C87 1099 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 OASLQ15646 514 aaKnown RBP10.4□□□□□ -0.74
SS18-205ENST00000542420 BBS12Q6ZW61 710 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 ANKS1BQ7Z6G8 1248 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 SLC35B2Q8TB61 432 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 TFAP2BQ92481 460 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 UPF1Q92900 1129 aaKnown RBP eCLIP10.4□□□□□ -0.74
SS18-205ENST00000542420 FAM212AQ96EL1 285 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 CCDC114Q96M63 670 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 HERPUD2Q9BSE4 406 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 FHDC1Q9C0D6 1143 aaPredicted RBP10.4□□□□□ -0.74
SS18-205ENST00000542420 CENPHQ9H3R5 247 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 ABHD16BQ9H3Z7 469 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 RNPEPQ9H4A4 650 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 UBN1Q9NPG3 1134 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 CYLDQ9NQC7 956 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.4□□□□□ -0.74
SS18-205ENST00000542420 FAM169AQ9Y6X4 670 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 IVNS1ABPQ9Y6Y0 642 aa10.4□□□□□ -0.74
SS18-205ENST00000542420 TRIP11Q15643 1979 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 GLTPD2A6NH11 291 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 DPYSL4O14531 572 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 MEFVO15553 781 aaPredicted RBP10.39□□□□□ -0.75
SS18-205ENST00000542420 KIAA0754O94854 1291 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 CALCAP01258 141 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 FAM163BP0C2L3 166 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 ADORA2AP29274 412 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 RPL7AP62424 266 aaKnown RBP10.39□□□□□ -0.75
SS18-205ENST00000542420 SLC25A11Q02978 314 aaKnown RBP10.39□□□□□ -0.75
SS18-205ENST00000542420 PTPN20Q4JDL3 420 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 SEZ6Q53EL9 994 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 WDR78Q5VTH9 848 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 IZUMO3Q5VZ72 239 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 C6orf89Q6UWU4 347 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 ARCQ7LC44 396 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 ZDHHC17Q8IUH5 632 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 SLC4A11Q8NBS3 891 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 RAPGEF5Q92565 580 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 COPS5Q92905 334 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 SGSM3Q96HU1 749 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 CFAP57Q96MR6 1250 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 ACAP3Q96P50 834 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 NSRP1Q9H0G5 558 aaKnown RBP10.39□□□□□ -0.75
SS18-205ENST00000542420 ASNSD1Q9NWL6 643 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 R3HDM2Q9Y2K5 976 aaKnown RBP10.39□□□□□ -0.75
SS18-205ENST00000542420 SLC15A5A6NIM6 579 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 E7EVH7 732 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 B4GALT5O43286 388 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 PEX10O60683 326 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 CDH16O75309 829 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 ECM2O94769 699 aaPredicted RBP10.39□□□□□ -0.75
SS18-205ENST00000542420 CD58P19256 250 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 PSMA2P25787 234 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 JADE1Q6IE81 842 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 DENND1BQ6P3S1 775 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 LCLAT1Q6UWP7 414 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 MFSD7Q6UXD7 560 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 RPAINQ86UA6 219 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 XYLT1Q86Y38 959 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 LRRC52Q8N7C0 313 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 CMASQ8NFW8 434 aaPredicted RBP10.39□□□□□ -0.75
SS18-205ENST00000542420 STK32AQ8WU08 396 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 ELMO3Q96BJ8 720 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 CHMP6Q96FZ7 201 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 MS4A4AQ96JQ5 239 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 FAM84AQ96KN4 292 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 MINDY3Q9H8M7 445 aa10.39□□□□□ -0.75
SS18-205ENST00000542420 ACTR5Q9H9F9 607 aaPredicted RBP10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms