RNA–Protein interactions for RNA: ENST00000538970.5

VAMP1-206, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 1 (best)

Gene VAMP1, Length 567 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-206ENST00000538970 LRRC52Q8N7C0 313 aa13.47□□□□□ -0.25
VAMP1-206ENST00000538970 LEO1Q8WVC0 666 aaPredicted RBP13.47□□□□□ -0.25
VAMP1-206ENST00000538970 SECISBP2LQ93073 1101 aaKnown RBP13.47□□□□□ -0.25
VAMP1-206ENST00000538970 INTS4Q96HW7 963 aaKnown RBP13.47□□□□□ -0.25
VAMP1-206ENST00000538970 FAM84AQ96KN4 292 aa13.47□□□□□ -0.25
VAMP1-206ENST00000538970 CBWD1Q9BRT8 395 aa13.47□□□□□ -0.25
VAMP1-206ENST00000538970 SLC46A2Q9BY10 475 aa13.47□□□□□ -0.25
VAMP1-206ENST00000538970 PARD6AQ9NPB6 346 aa13.47□□□□□ -0.25
VAMP1-206ENST00000538970 ZMYM5Q9UJ78 669 aa13.47□□□□□ -0.25
VAMP1-206ENST00000538970 L1RE1Q9UN81 338 aa13.47□□□□□ -0.25
VAMP1-206ENST00000538970 AGAP1Q9UPQ3 857 aa13.47□□□□□ -0.25
VAMP1-206ENST00000538970 MTMR6Q9Y217 621 aa13.47□□□□□ -0.25
VAMP1-206ENST00000538970 PCDHB5Q9Y5E4 795 aa13.47□□□□□ -0.25
VAMP1-206ENST00000538970 GOLGA8IPA6NC78 632 aa13.46□□□□□ -0.25
VAMP1-206ENST00000538970 GOLGA8JA6NMD2 632 aa13.46□□□□□ -0.25
VAMP1-206ENST00000538970 EXTL3O43909 919 aa13.46□□□□□ -0.25
VAMP1-206ENST00000538970 F11P03951 625 aa13.46□□□□□ -0.25
VAMP1-206ENST00000538970 SDHBP21912 280 aa13.46□□□□□ -0.25
VAMP1-206ENST00000538970 GPR15P49685 360 aa13.46□□□□□ -0.25
VAMP1-206ENST00000538970 NLRP12P59046 1061 aa13.46□□□□□ -0.25
VAMP1-206ENST00000538970 TSPY1Q01534 308 aa13.46□□□□□ -0.25
VAMP1-206ENST00000538970 CCINQ13939 588 aa13.46□□□□□ -0.25
VAMP1-206ENST00000538970 NFE2Q16621 373 aaPredicted RBP13.46□□□□□ -0.25
VAMP1-206ENST00000538970 SCARA3Q6AZY7 606 aa13.46□□□□□ -0.25
VAMP1-206ENST00000538970 SYCP3Q8IZU3 236 aa13.46□□□□□ -0.25
VAMP1-206ENST00000538970 CMTM8Q8IZV2 173 aa13.46□□□□□ -0.25
VAMP1-206ENST00000538970 CELF5Q8N6W0 485 aaKnown RBP13.46□□□□□ -0.25
VAMP1-206ENST00000538970 STKLD1Q8NE28 680 aa13.46□□□□□ -0.25
VAMP1-206ENST00000538970 PKMYT1Q99640 499 aa13.46□□□□□ -0.25
VAMP1-206ENST00000538970 ACBD6Q9BR61 282 aa13.46□□□□□ -0.25
VAMP1-206ENST00000538970 RTKNQ9BST9 563 aa13.46□□□□□ -0.25
VAMP1-206ENST00000538970 PI4K2AQ9BTU6 479 aa13.46□□□□□ -0.25
VAMP1-206ENST00000538970 PANK2Q9BZ23 570 aa13.46□□□□□ -0.25
VAMP1-206ENST00000538970 TMEM206Q9H813 350 aa13.46□□□□□ -0.25
VAMP1-206ENST00000538970 PANK4Q9NVE7 773 aa13.46□□□□□ -0.25
VAMP1-206ENST00000538970 DDX43Q9NXZ2 648 aaKnown RBP13.46□□□□□ -0.25
VAMP1-206ENST00000538970 ITGA11Q9UKX5 1188 aa13.46□□□□□ -0.25
VAMP1-206ENST00000538970 TCHHQ07283 1943 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 K7ESF4 209 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 TULP1O00294 542 aaPredicted RBP13.45□□□□□ -0.26
VAMP1-206ENST00000538970 HUS1O60921 280 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 PRPF40AO75400 957 aaKnown RBP13.45□□□□□ -0.26
VAMP1-206ENST00000538970 ACAT1P24752 427 aaKnown RBP13.45□□□□□ -0.26
VAMP1-206ENST00000538970 DDX6P26196 483 aaKnown RBP eCLIP13.45□□□□□ -0.26
VAMP1-206ENST00000538970 AVPR1AP37288 418 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 NASPP49321 788 aaPredicted RBP13.45□□□□□ -0.26
VAMP1-206ENST00000538970 LMNB2Q03252 620 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 DMWDQ09019 674 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 BFSP1Q12934 665 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 PON2Q15165 354 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 ITPRIPL2Q3MIP1 535 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 PPM1JQ5JR12 505 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 INTS6LQ5JSJ4 861 aaKnown RBP13.45□□□□□ -0.26
VAMP1-206ENST00000538970 OSTM1Q86WC4 334 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 TMEM86AQ8N2M4 240 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 CACTINQ8WUQ7 758 aaKnown RBP13.45□□□□□ -0.26
VAMP1-206ENST00000538970 USP13Q92995 863 aaPredicted RBP13.45□□□□□ -0.26
VAMP1-206ENST00000538970 FAM83CQ9BQN1 747 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 MTMR12Q9C0I1 747 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 ZSCAN16Q9H4T2 348 aaPredicted RBP13.45□□□□□ -0.26
VAMP1-206ENST00000538970 PCIF1Q9H4Z3 704 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 PDE11AQ9HCR9 933 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 ABCB6Q9NP58 842 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 C2orf42Q9NWW7 574 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 THG1LQ9NWX6 298 aaKnown RBP13.45□□□□□ -0.26
VAMP1-206ENST00000538970 GDAP2Q9NXN4 497 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 SIX4Q9UIU6 781 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 GMEB2Q9UKD1 530 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 USP18Q9UMW8 372 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 CCL26Q9Y258 94 aa13.45□□□□□ -0.26
VAMP1-206ENST00000538970 PTPRJQ12913 1337 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 SOBPA7XYQ1 873 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 PRR5-ARHGAP8B1AHC4 643 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 CHURC1-FNTBB4DL54 471 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 TADA3O75528 432 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 NOL4O94818 638 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 PRPF6O94906 941 aaKnown RBP13.44□□□□□ -0.26
VAMP1-206ENST00000538970 KRT19P08727 400 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 TMEM191BP0C7N4 346 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 CSH1P0DML2 217 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 CSH2P0DML3 217 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 FNTBP49356 437 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 RBP5P82980 135 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 ARHGAP8P85298 464 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 MYL7Q01449 175 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 LPAL2Q16609 132 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 DDR2Q16832 855 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 CCDC142Q17RM4 750 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 SDHAF4Q5VUM1 108 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 TXNDC8Q6A555 127 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 LAIR1Q6GTX8 287 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 CCDC65Q8IXS2 484 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 ADGRF2Q8IZF7 708 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 GPD1LQ8N335 351 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 SYNPOQ8N3V7 929 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 CSGALNACT2Q8N6G5 542 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 TOP6BLQ8N6T0 577 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 PDILTQ8N807 584 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 MAB21L3Q8N8X9 362 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 GLIS3Q8NEA6 775 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms