RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 SRSF5Q13243 272 aaKnown RBP9.1□□□□□ -0.95
USP28-203ENST00000537490 LRRC32Q14392 662 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 PPP2R5DQ14738 602 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 DDR2Q16832 855 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 CCDC142Q17RM4 750 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 DGKKQ5KSL6 1271 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 LMBRD2Q68DH5 695 aaPredicted RBP9.1□□□□□ -0.95
USP28-203ENST00000537490 TXNDC8Q6A555 127 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 C1orf228Q6PIY5 440 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 GPR161Q8N6U8 529 aaKnown RBP9.1□□□□□ -0.95
USP28-203ENST00000537490 CELF5Q8N6W0 485 aaKnown RBP9.1□□□□□ -0.95
USP28-203ENST00000537490 PDILTQ8N807 584 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 MAB21L3Q8N8X9 362 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 GLIS3Q8NEA6 775 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 RIN3Q8TB24 985 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 NOC3LQ8WTT2 800 aaKnown RBP9.1□□□□□ -0.95
USP28-203ENST00000537490 CACTINQ8WUQ7 758 aaKnown RBP9.1□□□□□ -0.95
USP28-203ENST00000537490 USP13Q92995 863 aaPredicted RBP9.1□□□□□ -0.95
USP28-203ENST00000537490 SECISBP2LQ93073 1101 aaKnown RBP9.1□□□□□ -0.95
USP28-203ENST00000537490 HPS3Q969F9 1004 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 GCNAQ96QF7 691 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 PKMYT1Q99640 499 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 FAM83CQ9BQN1 747 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 ACBD6Q9BR61 282 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 RBAKQ9NYW8 714 aaPredicted RBP9.1□□□□□ -0.95
USP28-203ENST00000537490 SIX4Q9UIU6 781 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 GTF3C4Q9UKN8 822 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 MAGED2Q9UNF1 606 aaPredicted RBP9.1□□□□□ -0.95
USP28-203ENST00000537490 CCL26Q9Y258 94 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 MORC2Q9Y6X9 1032 aaPredicted RBP9.1□□□□□ -0.95
USP28-203ENST00000537490 TICRRQ7Z2Z1 1910 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 CEP250Q9BV73 2442 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 OTOL1A6NHN0 477 aaPredicted RBP9.09□□□□□ -0.95
USP28-203ENST00000537490 GABRDO14764 452 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 HUS1O60921 280 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 PAPSS2O95340 614 aaPredicted RBP9.09□□□□□ -0.95
USP28-203ENST00000537490 KRT19P08727 400 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 CSH1P0DML2 217 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 CSH2P0DML3 217 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 CYP2F1P24903 491 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 NASPP49321 788 aaPredicted RBP9.09□□□□□ -0.95
USP28-203ENST00000537490 ATXN1P54253 815 aaKnown RBP9.09□□□□□ -0.95
USP28-203ENST00000537490 RBP5P82980 135 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 ALCAMQ13740 583 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 CCINQ13939 588 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 NFE2Q16621 373 aaPredicted RBP9.09□□□□□ -0.95
USP28-203ENST00000537490 ITPRIPL2Q3MIP1 535 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 INTS6LQ5JSJ4 861 aaKnown RBP9.09□□□□□ -0.95
USP28-203ENST00000537490 HEATR6Q6AI08 1181 aaKnown RBP9.09□□□□□ -0.95
USP28-203ENST00000537490 TRIM68Q6AZZ1 485 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 PRR23BQ6ZRT6 265 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 MON1AQ86VX9 555 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 GPD1LQ8N335 351 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 LRRC52Q8N7C0 313 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 OR5B17Q8NGF7 314 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 LEO1Q8WVC0 666 aaPredicted RBP9.09□□□□□ -0.95
USP28-203ENST00000537490 CHFRQ96EP1 664 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 INTS4Q96HW7 963 aaKnown RBP9.09□□□□□ -0.95
USP28-203ENST00000537490 MTMR12Q9C0I1 747 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 TMEM206Q9H813 350 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 HPS4Q9NQG7 708 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 THG1LQ9NWX6 298 aaKnown RBP9.09□□□□□ -0.95
USP28-203ENST00000537490 GDAP2Q9NXN4 497 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 TFIP11Q9UBB9 837 aaKnown RBP9.09□□□□□ -0.95
USP28-203ENST00000537490 GMEB2Q9UKD1 530 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 ITGA11Q9UKX5 1188 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 USP18Q9UMW8 372 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 SNX9Q9Y5X1 595 aa9.09□□□□□ -0.95
USP28-203ENST00000537490 PTPRJQ12913 1337 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 STX6O43752 255 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 ATP2C2O75185 946 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 TADA3O75528 432 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 NOL4O94818 638 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 TMEM191BP0C7N4 346 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 ARSAP15289 507 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 DDX6P26196 483 aaKnown RBP eCLIP9.08□□□□□ -0.96
USP28-203ENST00000537490 HOXD13P35453 343 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 AVPR1AP37288 418 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 RPL10AP62906 217 aaKnown RBP9.08□□□□□ -0.96
USP28-203ENST00000537490 MYL7Q01449 175 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 SPEM2Q0P670 501 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 RUNX3Q13761 415 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 SIM2Q14190 667 aaPredicted RBP9.08□□□□□ -0.96
USP28-203ENST00000537490 STK38Q15208 465 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 SOWAHAQ2M3V2 549 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 LAIR1Q6GTX8 287 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 FSTL4Q6MZW2 842 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 PKN3Q6P5Z2 889 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 LONP2Q86WA8 852 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 CBWD2Q8IUF1 395 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 CCDC65Q8IXS2 484 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 ADGRF2Q8IZF7 708 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 TMEM86AQ8N2M4 240 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 SYNPOQ8N3V7 929 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 TOP6BLQ8N6T0 577 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 LINC00301Q8NCQ3 95 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 MRPS31Q92665 395 aaKnown RBP9.08□□□□□ -0.96
USP28-203ENST00000537490 ZSCAN16Q9H4T2 348 aaPredicted RBP9.08□□□□□ -0.96
USP28-203ENST00000537490 EBF3Q9H4W6 596 aa9.08□□□□□ -0.96
USP28-203ENST00000537490 FBRSL1Q9HCM7 1045 aaKnown RBP9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms