RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 RNF103O00237 685 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 XPO1O14980 1071 aaKnown RBP11.08□□□□□ -0.64
CLIP1-209ENST00000537178 STRNO43815 780 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 NMT2O60551 498 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 SOAT2O75908 522 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 CD4P01730 458 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 SRGNP10124 158 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 TXNP10599 105 aaKnown RBP11.08□□□□□ -0.64
CLIP1-209ENST00000537178 RARBP10826 455 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 SOAT1P35610 550 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 FMO5P49326 533 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 RGS7P49802 495 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 C3orf62Q6ZUJ4 267 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 MTERF3Q96E29 417 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 NSL1Q96IY1 281 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 TMEM117Q9H0C3 514 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 KCND2Q9NZV8 630 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 NDUFA13Q9P0J0 144 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 SPASTQ9UBP0 616 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 AP4S1Q9Y587 144 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 PCDHB2Q9Y5E7 798 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 PLEKHG2Q9H7P9 1386 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 CYTH3O43739 400 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 TADA2AO75478 443 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 NPM3O75607 178 aaKnown RBP11.08□□□□□ -0.64
CLIP1-209ENST00000537178 RBP3P10745 1247 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 UCHL3P15374 230 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 ACADSP16219 412 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 LTKP29376 864 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 SKIV2LQ15477 1246 aaKnown RBP11.08□□□□□ -0.64
CLIP1-209ENST00000537178 TRIM16LQ309B1 348 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 TTLL9Q3SXZ7 439 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 TTC39BQ5VTQ0 682 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-209ENST00000537178 JAMLQ86YT9 394 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 SUGP1Q8IWZ8 645 aaKnown RBP11.08□□□□□ -0.64
CLIP1-209ENST00000537178 STKLD1Q8NE28 680 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 ADAM33Q9BZ11 813 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 TRIM8Q9BZR9 551 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 SYNDIG1Q9H7V2 258 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 NMRK1Q9NWW6 199 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 DBR1Q9UK59 544 aaKnown RBP11.08□□□□□ -0.64
CLIP1-209ENST00000537178 ATF5Q9Y2D1 282 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-209ENST00000537178 ENO4A6NNW6 628 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 ECE2O60344 883 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 MLNP12872 115 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 TCN1P20061 433 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-209ENST00000537178 POU4F1Q01851 419 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 PLOD1Q02809 727 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-209ENST00000537178 TWF1Q12792 350 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 MAPRE1Q15691 268 aaKnown RBP11.08□□□□□ -0.64
CLIP1-209ENST00000537178 ARHGAP17Q68EM7 881 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 SLC30A5Q8TAD4 765 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 SPATA18Q8TC71 538 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 ZNF512Q96ME7 567 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-209ENST00000537178 GPR63Q9BZJ6 419 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 MUC3BQ9H195 1237 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 TRPC7Q9HCX4 862 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 PRDM5Q9NQX1 630 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-209ENST00000537178 GEMIN8Q9NWZ8 242 aaKnown RBP11.08□□□□□ -0.64
CLIP1-209ENST00000537178 A0A1B0GTH6 734 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 MAGEB2O15479 319 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 NBNO60934 754 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 PRIM2P49643 509 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 NAB2Q15742 525 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 FAM83EQ2M2I3 478 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 SLC44A4Q53GD3 710 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 GJC2Q5T442 439 aaPredicted RBP11.07□□□□□ -0.64
CLIP1-209ENST00000537178 ARMC6Q6NXE6 501 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 LVRNQ6Q4G3 990 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 CCDC60Q8IWA6 550 aaPredicted RBP11.07□□□□□ -0.64
CLIP1-209ENST00000537178 DCP1BQ8IZD4 617 aaKnown RBP11.07□□□□□ -0.64
CLIP1-209ENST00000537178 PDP2Q9P2J9 529 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 ITIH6Q6UXX5 1313 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 LOC100653049A0A140TA62 436 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 FANCGO15287 622 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 KRT34O76011 436 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 USP1O94782 785 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 ALOX15P16050 662 aaPredicted RBP11.07□□□□□ -0.64
CLIP1-209ENST00000537178 CENPCQ03188 943 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 MTF1Q14872 753 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 EDRF1Q3B7T1 1238 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 OLFML2BQ68BL8 750 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 RINLQ6ZS11 566 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 FGD2Q7Z6J4 655 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 OOSP2Q86WS3 158 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 PGBD3Q8N328 593 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 CPA5Q8WXQ8 436 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 MCEEQ96PE7 176 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 NT5C1AQ9BXI3 368 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 GOLPH3Q9H4A6 298 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 SLC38A7Q9NVC3 462 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.07□□□□□ -0.64
CLIP1-209ENST00000537178 NARFQ9UHQ1 456 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 KCNH4Q9UQ05 1017 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 CCT8L1PA6NM43 557 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 EPB42P16452 691 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 CHRM3P20309 590 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 SSTR3P32745 418 aaPredicted RBP11.07□□□□□ -0.64
CLIP1-209ENST00000537178 LSP1P33241 339 aa11.07□□□□□ -0.64
CLIP1-209ENST00000537178 VHLP40337 213 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms