RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 ARFGEF1Q9Y6D6 1849 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 ANKRD50Q9ULJ7 1429 aa5.01□□□□□ -1.61
CD44-235ENST00000532339 MARCH6O60337 910 aa5.01□□□□□ -1.61
CD44-235ENST00000532339 CKBP12277 381 aa5.01□□□□□ -1.61
CD44-235ENST00000532339 AGXTP21549 392 aa5.01□□□□□ -1.61
CD44-235ENST00000532339 KCNA3P22001 575 aa5.01□□□□□ -1.61
CD44-235ENST00000532339 MPLP40238 635 aa5.01□□□□□ -1.61
CD44-235ENST00000532339 SLC6A9P48067 706 aa5.01□□□□□ -1.61
CD44-235ENST00000532339 CLK3P49761 638 aaKnown RBP5.01□□□□□ -1.61
CD44-235ENST00000532339 GRM1Q13255 1194 aa5.01□□□□□ -1.61
CD44-235ENST00000532339 MTM1Q13496 603 aa5.01□□□□□ -1.61
CD44-235ENST00000532339 ATP2B3Q16720 1220 aa5.01□□□□□ -1.61
CD44-235ENST00000532339 CCDC142Q17RM4 750 aa5.01□□□□□ -1.61
CD44-235ENST00000532339 SYCE2Q6PIF2 218 aa5.01□□□□□ -1.61
CD44-235ENST00000532339 CTU1Q7Z7A3 348 aaKnown RBP5.01□□□□□ -1.61
CD44-235ENST00000532339 AMOTL1Q8IY63 956 aa5.01□□□□□ -1.61
CD44-235ENST00000532339 SLC44A3Q8N4M1 653 aa5.01□□□□□ -1.61
CD44-235ENST00000532339 SSH1Q8WYL5 1049 aa5.01□□□□□ -1.61
CD44-235ENST00000532339 VOPP1Q96AW1 172 aa5.01□□□□□ -1.61
CD44-235ENST00000532339 BBC3Q96PG8 261 aaPredicted RBP5.01□□□□□ -1.61
CD44-235ENST00000532339 TBCCD1Q9NVR7 557 aa5.01□□□□□ -1.61
CD44-235ENST00000532339 FBXO34Q9NWN3 711 aa5.01□□□□□ -1.61
CD44-235ENST00000532339 USP54Q70EL1 1684 aa5.01□□□□□ -1.61
CD44-235ENST00000532339 MUC3AQ02505 3323 aa5.01□□□□□ -1.61
CD44-235ENST00000532339 N4BP2Q86UW6 1770 aaPredicted RBP5.01□□□□□ -1.61
CD44-235ENST00000532339 SBF1O95248 1867 aa5□□□□□ -1.61
CD44-235ENST00000532339 RPGRIP1LQ68CZ1 1315 aa5□□□□□ -1.61
CD44-235ENST00000532339 DAPK1P53355 1430 aa5□□□□□ -1.61
CD44-235ENST00000532339 MMP10P09238 476 aa5□□□□□ -1.61
CD44-235ENST00000532339 SLC6A2P23975 617 aa5□□□□□ -1.61
CD44-235ENST00000532339 CD38P28907 300 aa5□□□□□ -1.61
CD44-235ENST00000532339 PCSK1P29120 753 aa5□□□□□ -1.61
CD44-235ENST00000532339 HSD11B2P80365 405 aa5□□□□□ -1.61
CD44-235ENST00000532339 MRPS21P82921 87 aaKnown RBP5□□□□□ -1.61
CD44-235ENST00000532339 KLF1Q13351 362 aaPredicted RBP5□□□□□ -1.61
CD44-235ENST00000532339 PKN2Q16513 984 aaKnown RBP5□□□□□ -1.61
CD44-235ENST00000532339 SMIM5Q71RC9 77 aa5□□□□□ -1.61
CD44-235ENST00000532339 UBE3BQ7Z3V4 1068 aa5□□□□□ -1.61
CD44-235ENST00000532339 RD3Q7Z3Z2 195 aa5□□□□□ -1.61
CD44-235ENST00000532339 CAGE1Q8TC20 777 aa5□□□□□ -1.61
CD44-235ENST00000532339 Q96MF0 132 aa5□□□□□ -1.61
CD44-235ENST00000532339 MYOCQ99972 504 aa5□□□□□ -1.61
CD44-235ENST00000532339 C7orf25Q9BPX7 421 aa5□□□□□ -1.61
CD44-235ENST00000532339 ZNF277Q9NRM2 450 aaPredicted RBP5□□□□□ -1.61
CD44-235ENST00000532339 HOMER2Q9NSB8 354 aa5□□□□□ -1.61
CD44-235ENST00000532339 MCM8Q9UJA3 840 aa5□□□□□ -1.61
CD44-235ENST00000532339 RUVBL1Q9Y265 456 aaKnown RBP5□□□□□ -1.61
CD44-235ENST00000532339 MTO1Q9Y2Z2 717 aaKnown RBP5□□□□□ -1.61
CD44-235ENST00000532339 COX11Q9Y6N1 276 aa5□□□□□ -1.61
CD44-235ENST00000532339 PIEZO1Q92508 2521 aa5□□□□□ -1.61
CD44-235ENST00000532339 BRCA1P38398 1863 aaKnown RBP5□□□□□ -1.61
CD44-235ENST00000532339 EIF3AQ14152 1382 aaKnown RBP5□□□□□ -1.61
CD44-235ENST00000532339 CCDC7Q96M83 1385 aa5□□□□□ -1.61
CD44-235ENST00000532339 LY75O60449 1722 aa5□□□□□ -1.61
CD44-235ENST00000532339 LAMA3Q16787 3333 aa4.99□□□□□ -1.61
CD44-235ENST00000532339 PPIP5K1Q6PFW1 1433 aa4.99□□□□□ -1.61
CD44-235ENST00000532339 NSD3Q9BZ95 1437 aa4.99□□□□□ -1.61
CD44-235ENST00000532339 PKD1L2Q7Z442 2459 aa4.99□□□□□ -1.61
CD44-235ENST00000532339 MASP2O00187 686 aa4.99□□□□□ -1.61
CD44-235ENST00000532339 ERN1O75460 977 aaKnown RBP4.99□□□□□ -1.61
CD44-235ENST00000532339 PARNO95453 639 aaKnown RBP4.99□□□□□ -1.61
CD44-235ENST00000532339 AMY1AP04745 511 aa4.99□□□□□ -1.61
CD44-235ENST00000532339 DDCP20711 480 aa4.99□□□□□ -1.61
CD44-235ENST00000532339 CREMQ03060 361 aa4.99□□□□□ -1.61
CD44-235ENST00000532339 BRDTQ58F21 947 aaPredicted RBP4.99□□□□□ -1.61
CD44-235ENST00000532339 Q6ZNX1 250 aa4.99□□□□□ -1.61
CD44-235ENST00000532339 FITM2Q8N6M3 262 aa4.99□□□□□ -1.61
CD44-235ENST00000532339 SIMC1Q8NDZ2 872 aa4.99□□□□□ -1.61
CD44-235ENST00000532339 OR2I1PQ8NGU4 316 aa4.99□□□□□ -1.61
CD44-235ENST00000532339 NUP133Q8WUM0 1156 aa4.99□□□□□ -1.61
CD44-235ENST00000532339 NELL1Q92832 810 aa4.99□□□□□ -1.61
CD44-235ENST00000532339 MED15Q96RN5 788 aa4.99□□□□□ -1.61
CD44-235ENST00000532339 PNKPQ96T60 521 aa4.99□□□□□ -1.61
CD44-235ENST00000532339 CASS4Q9NQ75 786 aa4.99□□□□□ -1.61
CD44-235ENST00000532339 USP25Q9UHP3 1055 aa4.99□□□□□ -1.61
CD44-235ENST00000532339 MYBBP1AQ9BQG0 1328 aaKnown RBP4.98□□□□□ -1.61
CD44-235ENST00000532339 ITSN1Q15811 1721 aa4.98□□□□□ -1.61
CD44-235ENST00000532339 MYADML2A6NDP7 307 aa4.98□□□□□ -1.61
CD44-235ENST00000532339 TRIM75PA6NK02 468 aa4.98□□□□□ -1.61
CD44-235ENST00000532339 PRSS23O95084 383 aa4.98□□□□□ -1.61
CD44-235ENST00000532339 S100BP04271 92 aaPredicted RBP4.98□□□□□ -1.61
CD44-235ENST00000532339 ELLP55199 621 aaPredicted RBP4.98□□□□□ -1.61
CD44-235ENST00000532339 ATP8B2P98198 1209 aa4.98□□□□□ -1.61
CD44-235ENST00000532339 EXOSC10Q01780 885 aaKnown RBP4.98□□□□□ -1.61
CD44-235ENST00000532339 CYP2A13Q16696 494 aa4.98□□□□□ -1.61
CD44-235ENST00000532339 DACT2Q5SW24 774 aa4.98□□□□□ -1.61
CD44-235ENST00000532339 FBXO42Q6P3S6 717 aa4.98□□□□□ -1.61
CD44-235ENST00000532339 COLGALT2Q8IYK4 626 aa4.98□□□□□ -1.61
CD44-235ENST00000532339 CNTROBQ8N137 903 aa4.98□□□□□ -1.61
CD44-235ENST00000532339 ZGPATQ8N5A5 531 aaKnown RBP4.98□□□□□ -1.61
CD44-235ENST00000532339 NLGN4YQ8NFZ3 816 aaPredicted RBP4.98□□□□□ -1.61
CD44-235ENST00000532339 SLC2A13Q96QE2 648 aa4.98□□□□□ -1.61
CD44-235ENST00000532339 R3HDMLQ9H3Y0 253 aa4.98□□□□□ -1.61
CD44-235ENST00000532339 GSTO2Q9H4Y5 243 aa4.98□□□□□ -1.61
CD44-235ENST00000532339 TAF1DQ9H5J8 278 aaPredicted RBP4.98□□□□□ -1.61
CD44-235ENST00000532339 DDX21Q9NR30 783 aaKnown RBP eCLIP4.98□□□□□ -1.61
CD44-235ENST00000532339 SAGE1Q9NXZ1 904 aa4.98□□□□□ -1.61
CD44-235ENST00000532339 SAP30BPQ9UHR5 308 aaKnown RBP4.98□□□□□ -1.61
CD44-235ENST00000532339 TLK1Q9UKI8 766 aa4.98□□□□□ -1.61
CD44-235ENST00000532339 DMTF1Q9Y222 760 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms