RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 C3orf70A6NLC5 250 aaPredicted RBP20.27■□□□□ 0.84
VPS28-213ENST00000530983 TYROBPO43914 113 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 IFNB1P01574 187 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 PTPRAP18433 802 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 YARSP54577 528 aaKnown RBP20.27■□□□□ 0.84
VPS28-213ENST00000530983 GPX6P59796 221 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 PLCB3Q01970 1234 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 SLC1A5Q15758 541 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 CYP4A22Q5TCH4 519 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 WDR49Q8IV35 697 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 MRRFQ96E11 262 aaKnown RBP20.27■□□□□ 0.84
VPS28-213ENST00000530983 ADAM33Q9BZ11 813 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 ETNK1Q9HBU6 452 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 DDX56Q9NY93 547 aaKnown RBP20.27■□□□□ 0.84
VPS28-213ENST00000530983 CHKBQ9Y259 395 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 C15orf41Q9Y2V0 281 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 FARP1Q9Y4F1 1045 aaPredicted RBP20.27■□□□□ 0.84
VPS28-213ENST00000530983 GOLGA8SH3BPF8 625 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 GOLGA8MH3BSY2 632 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 ATP2A1O14983 1001 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 ADCY3O60266 1144 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 EDF1O60869 148 aaKnown RBP20.27■□□□□ 0.84
VPS28-213ENST00000530983 CA4P22748 312 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 GAD2Q05329 585 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 RASA2Q15283 850 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 ANKMY2Q8IV38 441 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 TFAP2BQ92481 460 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 UTP4Q969X6 686 aaKnown RBP20.27■□□□□ 0.84
VPS28-213ENST00000530983 ERP27Q96DN0 273 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 SLC24A3Q9HC58 644 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 PSMC3IPQ9P2W1 217 aaPredicted RBP20.27■□□□□ 0.84
VPS28-213ENST00000530983 SAE1Q9UBE0 346 aaPredicted RBP20.27■□□□□ 0.84
VPS28-213ENST00000530983 SLC24A2Q9UI40 661 aa20.27■□□□□ 0.84
VPS28-213ENST00000530983 CLUHO75153 1309 aa20.26■□□□□ 0.83
VPS28-213ENST00000530983 CCND1P24385 295 aa20.26■□□□□ 0.83
VPS28-213ENST00000530983 MAK16Q9BXY0 300 aaKnown RBP20.26■□□□□ 0.83
VPS28-213ENST00000530983 ZNF518BQ9C0D4 1074 aa20.26■□□□□ 0.83
VPS28-213ENST00000530983 FZD1Q9UP38 647 aa20.26■□□□□ 0.83
VPS28-213ENST00000530983 USH1CQ9Y6N9 552 aa20.26■□□□□ 0.83
VPS28-213ENST00000530983 LOC285556D6RIA3 1793 aa20.26■□□□□ 0.83
VPS28-213ENST00000530983 IGKV6D-21A0A0A0MT36 114 aa20.26■□□□□ 0.83
VPS28-213ENST00000530983 FGFR1P11362 822 aa20.26■□□□□ 0.83
VPS28-213ENST00000530983 CDH5P33151 784 aaPredicted RBP20.26■□□□□ 0.83
VPS28-213ENST00000530983 SATB1Q01826 763 aa20.26■□□□□ 0.83
VPS28-213ENST00000530983 TAP1Q03518 808 aa20.26■□□□□ 0.83
VPS28-213ENST00000530983 HIF1AQ16665 826 aa20.26■□□□□ 0.83
VPS28-213ENST00000530983 EFHC2Q5JST6 749 aa20.26■□□□□ 0.83
VPS28-213ENST00000530983 ZBTB33Q86T24 672 aa20.26■□□□□ 0.83
VPS28-213ENST00000530983 C12orf42Q96LP6 360 aa20.26■□□□□ 0.83
VPS28-213ENST00000530983 NIF3L1Q9GZT8 377 aa20.26■□□□□ 0.83
VPS28-213ENST00000530983 PPCSQ9HAB8 311 aa20.26■□□□□ 0.83
VPS28-213ENST00000530983 AS3MTQ9HBK9 375 aa20.26■□□□□ 0.83
VPS28-213ENST00000530983 TXLNGQ9NUQ3 528 aa20.26■□□□□ 0.83
VPS28-213ENST00000530983 HACL1Q9UJ83 578 aa20.26■□□□□ 0.83
VPS28-213ENST00000530983 SKAP2O75563 359 aaPredicted RBP20.25■□□□□ 0.83
VPS28-213ENST00000530983 EIF4BP23588 611 aaKnown RBP20.25■□□□□ 0.83
VPS28-213ENST00000530983 ICAM3P32942 547 aa20.25■□□□□ 0.83
VPS28-213ENST00000530983 AP3M2P53677 418 aa20.25■□□□□ 0.83
VPS28-213ENST00000530983 GDF10P55107 478 aa20.25■□□□□ 0.83
VPS28-213ENST00000530983 TARBP2Q15633 366 aaKnown RBP20.25■□□□□ 0.83
VPS28-213ENST00000530983 ANKRD22Q5VYY1 191 aa20.25■□□□□ 0.83
VPS28-213ENST00000530983 ZPBP2Q6X784 338 aa20.25■□□□□ 0.83
VPS28-213ENST00000530983 SAMD7Q7Z3H4 446 aa20.25■□□□□ 0.83
VPS28-213ENST00000530983 ERICH1Q86X53 443 aa20.25■□□□□ 0.83
VPS28-213ENST00000530983 PCYT2Q99447 389 aa20.25■□□□□ 0.83
VPS28-213ENST00000530983 C10orf88Q9H8K7 445 aa20.25■□□□□ 0.83
VPS28-213ENST00000530983 NOP53Q9NZM5 478 aaKnown RBP20.25■□□□□ 0.83
VPS28-213ENST00000530983 PCDHGC3Q9UN70 934 aa20.25■□□□□ 0.83
VPS28-213ENST00000530983 WEE2P0C1S8 567 aa20.25■□□□□ 0.83
VPS28-213ENST00000530983 SLC25A11Q02978 314 aaKnown RBP20.25■□□□□ 0.83
VPS28-213ENST00000530983 GRM1Q13255 1194 aa20.25■□□□□ 0.83
VPS28-213ENST00000530983 EFTUD2Q15029 972 aaKnown RBP eCLIP20.25■□□□□ 0.832e-7■■■■□ 23.3
VPS28-213ENST00000530983 SETDB1Q15047 1291 aa20.25■□□□□ 0.83
VPS28-213ENST00000530983 STXBP2Q15833 593 aa20.25■□□□□ 0.83
VPS28-213ENST00000530983 POLNQ7Z5Q5 900 aa20.25■□□□□ 0.83
VPS28-213ENST00000530983 LRRC8CQ8TDW0 803 aa20.25■□□□□ 0.83
VPS28-213ENST00000530983 WRNIP1Q96S55 665 aa20.25■□□□□ 0.83
VPS28-213ENST00000530983 RABGEF1Q9UJ41 708 aa20.25■□□□□ 0.83
VPS28-213ENST00000530983 MSCO60682 206 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 ITGBL1O95965 494 aaPredicted RBP20.24■□□□□ 0.83
VPS28-213ENST00000530983 RFC1P35251 1148 aaPredicted RBP20.24■□□□□ 0.83
VPS28-213ENST00000530983 RFC5P40937 340 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 CTCFP49711 727 aaPredicted RBP20.24■□□□□ 0.83
VPS28-213ENST00000530983 GEMIN4P57678 1058 aaKnown RBP20.24■□□□□ 0.83
VPS28-213ENST00000530983 DYNLT1P63172 113 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 LACTBP83111 547 aaPredicted RBP20.24■□□□□ 0.83
VPS28-213ENST00000530983 OTUD4Q01804 1114 aaKnown RBP20.24■□□□□ 0.83
VPS28-213ENST00000530983 SMTNL2Q2TAL5 461 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 MSS51Q4VC12 460 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 ARFGAP1Q8N6T3 406 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 ACTL9Q8TC94 416 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 CPT1BQ92523 772 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 LRRC37BQ96QE4 947 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 WDR83Q9BRX9 315 aaKnown RBP20.24■□□□□ 0.83
VPS28-213ENST00000530983 LRMDAQ9H2I8 198 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 ZNF112Q9UJU3 913 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 NDC80O14777 642 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 PPP1R12AO14974 1030 aaPredicted RBP20.24■□□□□ 0.83
VPS28-213ENST00000530983 KRT4P19013 534 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 IL1R2P27930 398 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms