RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 SNX27Q96L92 541 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 FAM81BQ96LP2 452 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 ZMAT2Q96NC0 199 aaKnown RBP7.96□□□□□ -1.14
CD44-228ENST00000528455 CGRRF1Q99675 332 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 PBX4Q9BYU1 374 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 NXF3Q9H4D5 531 aaKnown RBP7.96□□□□□ -1.14
CD44-228ENST00000528455 RSAD1Q9HA92 442 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 SLC28A3Q9HAS3 691 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 RAB20Q9NX57 234 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 MIOSQ9NXC5 875 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 DPP3Q9NY33 737 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 IMPACTQ9P2X3 320 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 UBQLN1Q9UMX0 589 aaKnown RBP7.96□□□□□ -1.14
CD44-228ENST00000528455 ITIH6Q6UXX5 1313 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 PDCD11Q14690 1871 aaKnown RBP7.96□□□□□ -1.14
CD44-228ENST00000528455 TDRD15B5MCY1 1934 aaKnown RBP7.95□□□□□ -1.14
CD44-228ENST00000528455 ANO9A1A5B4 782 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 PHACTR2O75167 634 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 SASH3O75995 380 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 AMHP03971 560 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 FAM163BP0C2L3 166 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 TMEM191BP0C7N4 346 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 ARAFP10398 606 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 FOSL2P15408 326 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 ATP2A2P16615 1042 aaKnown RBP7.95□□□□□ -1.14
CD44-228ENST00000528455 ATF7P17544 494 aaPredicted RBP7.95□□□□□ -1.14
CD44-228ENST00000528455 TARSP26639 723 aaKnown RBP7.95□□□□□ -1.14
CD44-228ENST00000528455 RPL9P32969 192 aaKnown RBP7.95□□□□□ -1.14
CD44-228ENST00000528455 MXI1P50539 228 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 RBP5P82980 135 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 TMEM132DQ14C87 1099 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 TCTN1Q2MV58 587 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 CBWD6Q4V339 395 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 EPC2Q52LR7 807 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 CBWD3Q5JTY5 395 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 CBWD5Q5RIA9 395 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 SPECC1LQ69YQ0 1117 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 GLB1LQ6UWU2 654 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 SYT9Q86SS6 491 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 NPAS4Q8IUM7 802 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 VSTM4Q8IW00 320 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 CCDC150Q8NCX0 1101 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 BEST2Q8NFU1 509 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 OR5B17Q8NGF7 314 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 PHOSPHO2Q8TCD6 241 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 LINC01599Q8WXQ3 324 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 MYLIPQ8WY64 445 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 ACDQ96AP0 544 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 PPP1R10Q96QC0 940 aaKnown RBP7.95□□□□□ -1.14
CD44-228ENST00000528455 GAD1Q99259 594 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 FAM124BQ9H5Z6 455 aaPredicted RBP7.95□□□□□ -1.14
CD44-228ENST00000528455 MMRN2Q9H8L6 949 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 AVENQ9NQS1 362 aaPredicted RBP7.95□□□□□ -1.14
CD44-228ENST00000528455 FBXL5Q9UKA1 691 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 ITGA11Q9UKX5 1188 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 SIK3Q9Y2K2 1263 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 R3HCC1Q9Y3T6 440 aaKnown RBP7.95□□□□□ -1.14
CD44-228ENST00000528455 MYO9BQ13459 2157 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 MICAL3Q7RTP6 2002 aa7.95□□□□□ -1.14
CD44-228ENST00000528455 PRUNE2Q8WUY3 3088 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 A0A1W2PQJ5 194 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 PIRO00625 290 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 PTGESO14684 152 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 DGKIO75912 1065 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 VNN1O95497 513 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 ALDH2P05091 517 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 RPLP1P05386 114 aaKnown RBP7.94□□□□□ -1.14
CD44-228ENST00000528455 TRIM49P0CI25 452 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 TRIM49CP0CI26 452 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 PCSK2P16519 638 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 SLC9A1P19634 815 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 LRPAP1P30533 357 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 KCNJ6P48051 423 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 PCBP4P57723 403 aaKnown RBP7.94□□□□□ -1.14
CD44-228ENST00000528455 TFAMQ00059 246 aaKnown RBP7.94□□□□□ -1.14
CD44-228ENST00000528455 TBX2Q13207 712 aaPredicted RBP7.94□□□□□ -1.14
CD44-228ENST00000528455 TRPC3Q13507 836 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 SYCP1Q15431 976 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 NAB2Q15742 525 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 NOMO2Q5JPE7 1267 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 KLHDC7AQ5VTJ3 777 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 TDRD10Q5VZ19 366 aaKnown RBP7.94□□□□□ -1.14
CD44-228ENST00000528455 DPY19L2P1Q6NXN4 242 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 DCLRE1AQ6PJP8 1040 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.94□□□□□ -1.14
CD44-228ENST00000528455 ENOSF1Q7L5Y1 443 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 DPH6Q7L8W6 267 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 DRC7Q8IY82 874 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 EFCAB13Q8IY85 973 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 GJD3Q8N144 294 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 ZNF397Q8NF99 534 aaPredicted RBP7.94□□□□□ -1.14
CD44-228ENST00000528455 NEK11Q8NG66 645 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 CXorf38Q8TB03 319 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 URGCPQ8TCY9 931 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 TAS1R2Q8TE23 839 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 LPPQ93052 612 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 BHMTQ93088 406 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 PDLIM2Q96JY6 352 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 UROC1Q96N76 676 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 RPS6KC1Q96S38 1066 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms