RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 HUS1O60921 280 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 PRAMEF12O95522 483 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 STAU1O95793 577 aaKnown RBP11.43□□□□□ -0.58
CD44-227ENST00000528086 TNNC2P02585 160 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 F11P03951 625 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 TNNI1P19237 187 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 AOC1P19801 751 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 BMP6P22004 513 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 WARSP23381 471 aaKnown RBP11.43□□□□□ -0.58
CD44-227ENST00000528086 CDH8P55286 799 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 PSMC1P62191 440 aaKnown RBP11.43□□□□□ -0.58
CD44-227ENST00000528086 PPP3CAQ08209 521 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 DDR2Q16832 855 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 MGAT5BQ3V5L5 792 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 ZACNQ401N2 412 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 WDR44Q5JSH3 913 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 PDZD4Q76G19 769 aaPredicted RBP11.43□□□□□ -0.58
CD44-227ENST00000528086 METTL23Q86XA0 190 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 THEM5Q8N1Q8 247 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 TMEM86AQ8N2M4 240 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 GUF1Q8N442 669 aaKnown RBP11.43□□□□□ -0.58
CD44-227ENST00000528086 ZSCAN18Q8TBC5 510 aaPredicted RBP11.43□□□□□ -0.58
CD44-227ENST00000528086 ELSPBP1Q96BH3 223 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 EEF2KMTQ96G04 330 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 SEPT5Q99719 369 aaPredicted RBP11.43□□□□□ -0.58
CD44-227ENST00000528086 FOXQ1Q9C009 403 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 SMYD3Q9H7B4 428 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 VRTNQ9H8Y1 702 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 TBC1D17Q9HA65 648 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 ASAH2Q9NR71 780 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 ABI2Q9NYB9 513 aaPredicted RBP11.43□□□□□ -0.58
CD44-227ENST00000528086 PCDHA5Q9Y5H7 936 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 PATJQ8NI35 1801 aa11.43□□□□□ -0.58
CD44-227ENST00000528086 FANCMQ8IYD8 2048 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 ZNF197O14709 1029 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 PDGFRBP09619 1106 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 CD44P16070 742 aaKnown RBP11.42□□□□□ -0.58
CD44-227ENST00000528086 CD72P21854 359 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 GABRR2P28476 465 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 PRCPP42785 496 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 RAP1GAPP47736 663 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 ALDH1A3P47895 512 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 CLCN5P51795 746 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 EPHB3P54753 998 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 STARD6P59095 220 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 CYP4F8P98187 520 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 GRM2Q14416 872 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 CYP4A22Q5TCH4 519 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 SPOPLQ6IQ16 392 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 PAQR9Q6ZVX9 377 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 MTSS1LQ765P7 747 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 SV2AQ7L0J3 742 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 DPH6Q7L8W6 267 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 SUGP1Q8IWZ8 645 aaKnown RBP11.42□□□□□ -0.58
CD44-227ENST00000528086 ZC3H3Q8IXZ2 948 aaKnown RBP11.42□□□□□ -0.58
CD44-227ENST00000528086 FLCNQ8NFG4 579 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 SPATA18Q8TC71 538 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 SPPL2BQ8TCT7 592 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 TMC2Q8TDI7 906 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 SMARCD2Q92925 531 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 SYT15Q9BQS2 421 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 SLC46A2Q9BY10 475 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 APOBEC3GQ9HC16 384 aaKnown RBP11.42□□□□□ -0.58
CD44-227ENST00000528086 ARHGEF3Q9NR81 526 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 ASB3Q9Y575 518 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 PCDHB5Q9Y5E4 795 aa11.42□□□□□ -0.58
CD44-227ENST00000528086 TACC1O75410 805 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 NOL4O94818 638 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 TRIM49P0CI25 452 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 TRIM49CP0CI26 452 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 HOXD11P31277 338 aaPredicted RBP11.41□□□□□ -0.58
CD44-227ENST00000528086 LHX1P48742 406 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 TUFMP49411 452 aaKnown RBP11.41□□□□□ -0.58
CD44-227ENST00000528086 NLRP12P59046 1061 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 USP46P62068 366 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 FAM160A1Q05DH4 1040 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 PLD1Q13393 1074 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 WDR72Q3MJ13 1102 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 CFAP221Q4G0U5 840 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 SLC44A4Q53GD3 710 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 IQCEQ6IPM2 695 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 PHLDB3Q6NSJ2 640 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 ARID3BQ8IVW6 561 aaPredicted RBP11.41□□□□□ -0.58
CD44-227ENST00000528086 DCP1BQ8IZD4 617 aaKnown RBP11.41□□□□□ -0.58
CD44-227ENST00000528086 LEMD2Q8NC56 503 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 GOLGA5Q8TBA6 731 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 C2orf15Q8WU43 125 aaKnown RBP11.41□□□□□ -0.58
CD44-227ENST00000528086 MYLPFQ96A32 169 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 CHFRQ96EP1 664 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 PCED1BQ96HM7 432 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 FNBP1Q96RU3 617 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 SLC22A12Q96S37 553 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 B3GNT5Q9BYG0 378 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 SMG9Q9H0W8 520 aaKnown RBP11.41□□□□□ -0.58
CD44-227ENST00000528086 KCNH6Q9H252 994 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 ABCB6Q9NP58 842 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 HMGXB4Q9UGU5 601 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 FBXL21Q9UKT6 434 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 WDR87Q6ZQQ6 2873 aa11.41□□□□□ -0.58
CD44-227ENST00000528086 HELZP42694 1942 aaKnown RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms