RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 MAP1BP46821 2468 aaKnown RBP25.41■■□□□ 1.66
CPSF1-202ENST00000527827 CHD8Q9HCK8 2581 aa25.4■■□□□ 1.66
CPSF1-202ENST00000527827 TRDMT1O14717 391 aaKnown RBP25.4■■□□□ 1.66
CPSF1-202ENST00000527827 DDX6P26196 483 aaKnown RBP eCLIP25.4■■□□□ 1.66
CPSF1-202ENST00000527827 AVPR1AP37288 418 aa25.4■■□□□ 1.66
CPSF1-202ENST00000527827 SF3A1Q15459 793 aaKnown RBP25.4■■□□□ 1.66
CPSF1-202ENST00000527827 LARP1BQ659C4 914 aaKnown RBP25.4■■□□□ 1.66
CPSF1-202ENST00000527827 TXNDC8Q6A555 127 aa25.4■■□□□ 1.66
CPSF1-202ENST00000527827 USP49Q70CQ1 688 aa25.4■■□□□ 1.66
CPSF1-202ENST00000527827 NT5DC4Q86YG4 428 aa25.4■■□□□ 1.66
CPSF1-202ENST00000527827 KRI1Q8N9T8 703 aaKnown RBP25.4■■□□□ 1.66
CPSF1-202ENST00000527827 GAB3Q8WWW8 586 aa25.4■■□□□ 1.66
CPSF1-202ENST00000527827 HVCN1Q96D96 273 aa25.4■■□□□ 1.66
CPSF1-202ENST00000527827 STRA6Q9BX79 667 aa25.4■■□□□ 1.66
CPSF1-202ENST00000527827 TDP1Q9NUW8 608 aa25.4■■□□□ 1.66
CPSF1-202ENST00000527827 SMC3Q9UQE7 1217 aa25.4■■□□□ 1.66
CPSF1-202ENST00000527827 FOXD2O60548 495 aaPredicted RBP25.39■■□□□ 1.66
CPSF1-202ENST00000527827 IL18RAPO95256 599 aa25.39■■□□□ 1.66
CPSF1-202ENST00000527827 GRSF1Q12849 480 aaKnown RBP eCLIP25.39■■□□□ 1.66
CPSF1-202ENST00000527827 SDHAF4Q5VUM1 108 aa25.39■■□□□ 1.66
CPSF1-202ENST00000527827 DYMQ7RTS9 669 aa25.39■■□□□ 1.66
CPSF1-202ENST00000527827 ZSWIM2Q8NEG5 633 aa25.39■■□□□ 1.66
CPSF1-202ENST00000527827 EPSTI1Q96J88 318 aa25.39■■□□□ 1.66
CPSF1-202ENST00000527827 ZNF560Q96MR9 790 aa25.39■■□□□ 1.66
CPSF1-202ENST00000527827 PI4K2AQ9BTU6 479 aa25.39■■□□□ 1.66
CPSF1-202ENST00000527827 KIF9Q9HAQ2 790 aa25.39■■□□□ 1.66
CPSF1-202ENST00000527827 CCDC163A0A0D9SF12 145 aa25.38■■□□□ 1.65
CPSF1-202ENST00000527827 AXIN1O15169 862 aa25.38■■□□□ 1.65
CPSF1-202ENST00000527827 PRPF40AO75400 957 aaKnown RBP25.38■■□□□ 1.65
CPSF1-202ENST00000527827 ARSAP15289 507 aa25.38■■□□□ 1.65
CPSF1-202ENST00000527827 KCNA1Q09470 495 aa25.38■■□□□ 1.65
CPSF1-202ENST00000527827 BFSP1Q12934 665 aa25.38■■□□□ 1.65
CPSF1-202ENST00000527827 POSTNQ15063 836 aa25.38■■□□□ 1.65
CPSF1-202ENST00000527827 SCARA3Q6AZY7 606 aa25.38■■□□□ 1.65
CPSF1-202ENST00000527827 BRAPQ7Z569 592 aa25.38■■□□□ 1.65
CPSF1-202ENST00000527827 MON1AQ86VX9 555 aa25.38■■□□□ 1.65
CPSF1-202ENST00000527827 PDCL2Q8N4E4 241 aa25.38■■□□□ 1.65
CPSF1-202ENST00000527827 ARRDC1-AS1Q9H2J1 176 aa25.38■■□□□ 1.65
CPSF1-202ENST00000527827 FBRSL1Q9HCM7 1045 aaKnown RBP25.38■■□□□ 1.65
CPSF1-202ENST00000527827 L1RE1Q9UN81 338 aa25.38■■□□□ 1.65
CPSF1-202ENST00000527827 MAGED2Q9UNF1 606 aaPredicted RBP25.38■■□□□ 1.65
CPSF1-202ENST00000527827 SOBPA7XYQ1 873 aa25.37■■□□□ 1.65
CPSF1-202ENST00000527827 TADA3O75528 432 aa25.37■■□□□ 1.65
CPSF1-202ENST00000527827 RPP40O75818 363 aaKnown RBP25.37■■□□□ 1.65
CPSF1-202ENST00000527827 EGFP01133 1207 aa25.37■■□□□ 1.65
CPSF1-202ENST00000527827 CSH1P0DML2 217 aa25.37■■□□□ 1.65
CPSF1-202ENST00000527827 CSH2P0DML3 217 aa25.37■■□□□ 1.65
CPSF1-202ENST00000527827 POLR2BP30876 1174 aaKnown RBP25.37■■□□□ 1.65
CPSF1-202ENST00000527827 PNPLA4P41247 253 aa25.37■■□□□ 1.65
CPSF1-202ENST00000527827 RAP1GAPP47736 663 aa25.37■■□□□ 1.65
CPSF1-202ENST00000527827 TSPY1Q01534 308 aa25.37■■□□□ 1.65
CPSF1-202ENST00000527827 SF3A2Q15428 464 aaKnown RBP25.37■■□□□ 1.65
CPSF1-202ENST00000527827 NFE2Q16621 373 aaPredicted RBP25.37■■□□□ 1.65
CPSF1-202ENST00000527827 KBTBD6Q86V97 674 aa25.37■■□□□ 1.65
CPSF1-202ENST00000527827 LEO1Q8WVC0 666 aaPredicted RBP25.37■■□□□ 1.65
CPSF1-202ENST00000527827 MRPS31Q92665 395 aaKnown RBP25.37■■□□□ 1.65
CPSF1-202ENST00000527827 LOXL4Q96JB6 756 aa25.37■■□□□ 1.65
CPSF1-202ENST00000527827 POLR3BQ9NW08 1133 aaPredicted RBP25.37■■□□□ 1.65
CPSF1-202ENST00000527827 ANAPC1Q9H1A4 1944 aa25.36■■□□□ 1.65
CPSF1-202ENST00000527827 ATG13O75143 517 aa25.36■■□□□ 1.65
CPSF1-202ENST00000527827 EPN2O95208 641 aa25.36■■□□□ 1.65
CPSF1-202ENST00000527827 TFAMQ00059 246 aaKnown RBP25.36■■□□□ 1.65
CPSF1-202ENST00000527827 ZNF268Q14587 947 aaPredicted RBP25.36■■□□□ 1.65
CPSF1-202ENST00000527827 CCDC6Q16204 474 aa25.36■■□□□ 1.65
CPSF1-202ENST00000527827 CACNA2D4Q7Z3S7 1137 aa25.36■■□□□ 1.65
CPSF1-202ENST00000527827 C1orf127Q8N9H9 656 aa25.36■■□□□ 1.65
CPSF1-202ENST00000527827 CXorf38Q8TB03 319 aa25.36■■□□□ 1.65
CPSF1-202ENST00000527827 PKMYT1Q99640 499 aa25.36■■□□□ 1.65
CPSF1-202ENST00000527827 ACBD6Q9BR61 282 aa25.36■■□□□ 1.65
CPSF1-202ENST00000527827 FAM213AQ9BRX8 229 aa25.36■■□□□ 1.65
CPSF1-202ENST00000527827 AGAP1Q9UPQ3 857 aa25.36■■□□□ 1.65
CPSF1-202ENST00000527827 SLC8A2Q9UPR5 921 aa25.36■■□□□ 1.65
CPSF1-202ENST00000527827 MYO16Q9Y6X6 1858 aa25.35■■□□□ 1.65
CPSF1-202ENST00000527827 RNF40O75150 1001 aa25.35■■□□□ 1.65
CPSF1-202ENST00000527827 ITGB3P05106 788 aa25.35■■□□□ 1.65
CPSF1-202ENST00000527827 ZNF806P0C7X5 589 aa25.35■■□□□ 1.65
CPSF1-202ENST00000527827 CYP2F1P24903 491 aa25.35■■□□□ 1.65
CPSF1-202ENST00000527827 GALK1P51570 392 aa25.35■■□□□ 1.65
CPSF1-202ENST00000527827 LIMK1P53667 647 aa25.35■■□□□ 1.65
CPSF1-202ENST00000527827 DDR2Q16832 855 aa25.35■■□□□ 1.65
CPSF1-202ENST00000527827 AASDHQ4L235 1098 aaPredicted RBP25.35■■□□□ 1.65
CPSF1-202ENST00000527827 NAIF1Q69YI7 327 aaPredicted RBP25.35■■□□□ 1.65
CPSF1-202ENST00000527827 BRSK2Q8IWQ3 736 aa25.35■■□□□ 1.65
CPSF1-202ENST00000527827 DNAJC19Q96DA6 116 aa25.35■■□□□ 1.65
CPSF1-202ENST00000527827 SAAL1Q96ER3 474 aa25.35■■□□□ 1.65
CPSF1-202ENST00000527827 FAM84AQ96KN4 292 aa25.35■■□□□ 1.65
CPSF1-202ENST00000527827 MRPL44Q9H9J2 332 aaKnown RBP25.35■■□□□ 1.65
CPSF1-202ENST00000527827 RXFP3Q9NSD7 469 aa25.35■■□□□ 1.65
CPSF1-202ENST00000527827 DDX43Q9NXZ2 648 aaKnown RBP25.35■■□□□ 1.65
CPSF1-202ENST00000527827 TBC1D7Q9P0N9 293 aa25.35■■□□□ 1.65
CPSF1-202ENST00000527827 SEL1LQ9UBV2 794 aa25.35■■□□□ 1.65
CPSF1-202ENST00000527827 STK17AQ9UEE5 414 aa25.35■■□□□ 1.65
CPSF1-202ENST00000527827 KIAA1549LQ6ZVL6 1849 aa25.35■■□□□ 1.65
CPSF1-202ENST00000527827 MYMKA6NI61 221 aa25.34■■□□□ 1.65
CPSF1-202ENST00000527827 NOL4O94818 638 aa25.34■■□□□ 1.65
CPSF1-202ENST00000527827 ACAT1P24752 427 aaKnown RBP25.34■■□□□ 1.65
CPSF1-202ENST00000527827 CCDC142Q17RM4 750 aa25.34■■□□□ 1.65
CPSF1-202ENST00000527827 INTS6LQ5JSJ4 861 aaKnown RBP25.34■■□□□ 1.65
CPSF1-202ENST00000527827 L1TD1Q5T7N2 865 aaKnown RBP25.34■■□□□ 1.65
CPSF1-202ENST00000527827 CC2D1AQ6P1N0 951 aaPredicted RBP25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms