RNA–Protein interactions for RNA: ENST00000527158.2

SNRNP35-204, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 35, humanhuman

TSL 1 (best)

Gene SNRNP35, Length 2,161 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP35-204ENST00000527158 C18orf8Q96DM3 657 aa17.15■□□□□ 0.34
SNRNP35-204ENST00000527158 WDR35Q9P2L0 1181 aa17.15■□□□□ 0.34
SNRNP35-204ENST00000527158 NOD1Q9Y239 953 aa17.15■□□□□ 0.34
SNRNP35-204ENST00000527158 M0QYV0 167 aa17.14■□□□□ 0.33
SNRNP35-204ENST00000527158 O00370 1275 aa17.14■□□□□ 0.33
SNRNP35-204ENST00000527158 SHOX2O60902 331 aaPredicted RBP17.14■□□□□ 0.33
SNRNP35-204ENST00000527158 GGCXP38435 758 aa17.14■□□□□ 0.33
SNRNP35-204ENST00000527158 MGAT3Q09327 533 aa17.14■□□□□ 0.33
SNRNP35-204ENST00000527158 ITGA7Q13683 1181 aa17.14■□□□□ 0.33
SNRNP35-204ENST00000527158 AADACL2Q6P093 401 aa17.14■□□□□ 0.33
SNRNP35-204ENST00000527158 RHOT1Q8IXI2 618 aa17.14■□□□□ 0.33
SNRNP35-204ENST00000527158 GDF3Q9NR23 364 aa17.14■□□□□ 0.33
SNRNP35-204ENST00000527158 FAM105AQ9NUU6 356 aa17.14■□□□□ 0.33
SNRNP35-204ENST00000527158 MTUS1Q9ULD2 1270 aa17.14■□□□□ 0.33
SNRNP35-204ENST00000527158 RRP15Q9Y3B9 282 aaKnown RBP17.14■□□□□ 0.33
SNRNP35-204ENST00000527158 GRIN2DO15399 1336 aa17.14■□□□□ 0.33
SNRNP35-204ENST00000527158 TCRBV5S1A1TA0A578 114 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 GOLGA6CA6NDK9 693 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 GOLGA6DP0CG33 693 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 SSR1P43307 286 aaKnown RBP17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 RPL7AP62424 266 aaKnown RBP17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 ARHGEF6Q15052 776 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 PTPN20Q4JDL3 420 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 CYP4A22Q5TCH4 519 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 UNC93AQ86WB7 457 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 ARRDC4Q8NCT1 418 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 MCEEQ96PE7 176 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 MRPL45Q9BRJ2 306 aaKnown RBP17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 DNAI2Q9GZS0 605 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 RASSF4Q9H2L5 321 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 GOLGA6AQ9NYA3 693 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 KPNA7A9QM74 516 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 MYO1CO00159 1063 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 PSTPIP1O43586 416 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 GJB6O95452 261 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 MYBL2P10244 700 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 TAF6P49848 677 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 ACLYP53396 1101 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 PSMC1P62191 440 aaKnown RBP17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 LCLAT1Q6UWP7 414 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 LRRC31Q6UY01 552 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 SLC13A5Q86YT5 568 aaPredicted RBP17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 OR6B3Q8NGW1 331 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 IFT81Q8WYA0 676 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 RUFY1Q96T51 708 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 SH3GL2Q99962 352 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 PLEKHA4Q9H4M7 779 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 AMACRQ9UHK6 382 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 CYTH4Q9UIA0 394 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 USTQ9Y2C2 406 aa17.13■□□□□ 0.33
SNRNP35-204ENST00000527158 HSF2BPO75031 334 aa17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 GPD2P43304 727 aa17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 PTK7Q13308 1070 aa17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 PIGHQ14442 188 aaPredicted RBP17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 SOWAHAQ2M3V2 549 aa17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 SV2CQ496J9 727 aa17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 PPP1R15BQ5SWA1 713 aa17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 SND1Q7KZF4 910 aaKnown RBP eCLIP17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 GSPT2Q8IYD1 628 aaKnown RBP17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 EIF1ADQ8N9N8 165 aaKnown RBP17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 MIS12Q9H081 205 aa17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 GDAP2Q9NXN4 497 aa17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 FEZ2Q9UHY8 353 aaPredicted RBP17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 NR2E1Q9Y466 385 aa17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 SIGLEC16A6NMB1 481 aa17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 AGPSO00116 658 aa17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 KRT3P12035 628 aa17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 PAK2Q13177 524 aa17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 ZNF268Q14587 947 aaPredicted RBP17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 UBA3Q8TBC4 463 aa17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 GLT1D1Q96MS3 346 aa17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 CPXM1Q96SM3 734 aa17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 SLC38A7Q9NVC3 462 aa17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 TSPAN16Q9UKR8 245 aa17.12■□□□□ 0.33
SNRNP35-204ENST00000527158 A8MXQ7 604 aa17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 GOLGA8SH3BPF8 625 aa17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 GSCP56915 257 aaPredicted RBP17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 SOX4Q06945 474 aaPredicted RBP17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 PDCLQ13371 301 aa17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 ACOT1Q86TX2 421 aa17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 C12orf29Q8N999 325 aa17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 APPL2Q8NEU8 664 aa17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 IPO4Q8TEX9 1081 aaKnown RBP17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 DDX27Q96GQ7 796 aaKnown RBP17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 AGO3Q9H9G7 860 aaKnown RBP17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 GOLGA2P5Q9HBQ8 144 aa17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 TRIP11Q15643 1979 aa17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 ESYT3A0FGR9 886 aa17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 ZSCAN5CA6NGD5 496 aaPredicted RBP17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 MOXD2PA6NHM9 499 aa17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 PTGESO14684 152 aa17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 PHF2O75151 1096 aa17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 LRPAP1P30533 357 aa17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 CHRNA3P32297 505 aa17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 GABRB2P47870 512 aa17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 VEGFBP49765 207 aa17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 MAIP1Q8WWC4 291 aa17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 ZFP42Q96MM3 310 aa17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 PPP1R10Q96QC0 940 aaKnown RBP17.11■□□□□ 0.33
SNRNP35-204ENST00000527158 SNX25Q9H3E2 840 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms