RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 ZNF132P52740 706 aa20.03■□□□□ 0.8
VPS28-207ENST00000526977 CRIPAKQ8N1N5 446 aa20.03■□□□□ 0.8
VPS28-207ENST00000526977 ZNF653Q96CK0 615 aa20.03■□□□□ 0.8
VPS28-207ENST00000526977 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.03■□□□□ 0.84e-7■■■■□ 21.8
VPS28-207ENST00000526977 NUP85Q9BW27 656 aa20.03■□□□□ 0.8
VPS28-207ENST00000526977 PRKAG2Q9UGJ0 569 aa20.03■□□□□ 0.8
VPS28-207ENST00000526977 TET1Q8NFU7 2136 aa20.03■□□□□ 0.8
VPS28-207ENST00000526977 ABHD14A-ACY1A0A1B0GW23 586 aa20.03■□□□□ 0.8
VPS28-207ENST00000526977 PODXLO00592 558 aa20.03■□□□□ 0.8
VPS28-207ENST00000526977 FGFR1P11362 822 aa20.03■□□□□ 0.8
VPS28-207ENST00000526977 CLCNKBP51801 687 aa20.03■□□□□ 0.8
VPS28-207ENST00000526977 CDH8P55286 799 aa20.03■□□□□ 0.8
VPS28-207ENST00000526977 UPP1Q16831 310 aa20.03■□□□□ 0.8
VPS28-207ENST00000526977 DPH6Q7L8W6 267 aa20.03■□□□□ 0.8
VPS28-207ENST00000526977 HDXQ7Z353 690 aa20.03■□□□□ 0.8
VPS28-207ENST00000526977 NPAS4Q8IUM7 802 aa20.03■□□□□ 0.8
VPS28-207ENST00000526977 SMYD3Q9H7B4 428 aa20.03■□□□□ 0.8
VPS28-207ENST00000526977 SCN5AQ14524 2016 aa20.02■□□□□ 0.8
VPS28-207ENST00000526977 EFCAB14O75071 495 aa20.02■□□□□ 0.8
VPS28-207ENST00000526977 CYP1A1P04798 512 aaPredicted RBP20.02■□□□□ 0.8
VPS28-207ENST00000526977 CFHP08603 1231 aa20.02■□□□□ 0.8
VPS28-207ENST00000526977 FAM163BP0C2L3 166 aa20.02■□□□□ 0.8
VPS28-207ENST00000526977 CSF2RAP15509 400 aa20.02■□□□□ 0.8
VPS28-207ENST00000526977 INCA1Q0VD86 236 aa20.02■□□□□ 0.8
VPS28-207ENST00000526977 MESDQ14696 234 aa20.02■□□□□ 0.8
VPS28-207ENST00000526977 C8orf74Q6P047 294 aa20.02■□□□□ 0.8
VPS28-207ENST00000526977 CPA5Q8WXQ8 436 aa20.02■□□□□ 0.8
VPS28-207ENST00000526977 VWCEQ96DN2 955 aa20.02■□□□□ 0.8
VPS28-207ENST00000526977 CYFIP2Q96F07 1278 aa20.02■□□□□ 0.8
VPS28-207ENST00000526977 KRT12Q99456 494 aa20.02■□□□□ 0.8
VPS28-207ENST00000526977 UVRAGQ9P2Y5 699 aa20.02■□□□□ 0.8
VPS28-207ENST00000526977 BARX2Q9UMQ3 279 aaPredicted RBP20.02■□□□□ 0.8
VPS28-207ENST00000526977 PGRMC1O00264 195 aaKnown RBP20.02■□□□□ 0.79
VPS28-207ENST00000526977 CILPO75339 1184 aa20.02■□□□□ 0.79
VPS28-207ENST00000526977 MYBL2P10244 700 aa20.02■□□□□ 0.79
VPS28-207ENST00000526977 GNA15P30679 374 aa20.02■□□□□ 0.79
VPS28-207ENST00000526977 DCAF12L1Q5VU92 463 aa20.02■□□□□ 0.79
VPS28-207ENST00000526977 MCOLN2Q8IZK6 566 aa20.02■□□□□ 0.79
VPS28-207ENST00000526977 ZNF564Q8TBZ8 553 aaPredicted RBP20.02■□□□□ 0.79
VPS28-207ENST00000526977 RUBCNQ92622 972 aa20.02■□□□□ 0.79
VPS28-207ENST00000526977 SDCBP2Q9H190 292 aa20.02■□□□□ 0.79
VPS28-207ENST00000526977 CNOT8Q9UFF9 292 aaKnown RBP20.02■□□□□ 0.79
VPS28-207ENST00000526977 TTC7AQ9ULT0 858 aaPredicted RBP20.02■□□□□ 0.79
VPS28-207ENST00000526977 CASTOR2A6NHX0 329 aa20.01■□□□□ 0.79
VPS28-207ENST00000526977 SPTLC1O15269 473 aa20.01■□□□□ 0.79
VPS28-207ENST00000526977 HUS1O60921 280 aa20.01■□□□□ 0.79
VPS28-207ENST00000526977 PAEPP09466 180 aa20.01■□□□□ 0.79
VPS28-207ENST00000526977 RAP1GAPP47736 663 aa20.01■□□□□ 0.79
VPS28-207ENST00000526977 APPL2Q8NEU8 664 aa20.01■□□□□ 0.79
VPS28-207ENST00000526977 STIM2Q9P246 746 aa20.01■□□□□ 0.79
VPS28-207ENST00000526977 TMEM110-MUSTN1A8MSY1 372 aa20■□□□□ 0.79
VPS28-207ENST00000526977 COMTP21964 271 aa20■□□□□ 0.79
VPS28-207ENST00000526977 RNASELQ05823 741 aaKnown RBP20■□□□□ 0.79
VPS28-207ENST00000526977 DSC1Q08554 894 aa20■□□□□ 0.79
VPS28-207ENST00000526977 SOWAHAQ2M3V2 549 aa20■□□□□ 0.79
VPS28-207ENST00000526977 ZNF394Q53GI3 561 aa20■□□□□ 0.79
VPS28-207ENST00000526977 NAA35Q5VZE5 725 aa20■□□□□ 0.79
VPS28-207ENST00000526977 DCLRE1AQ6PJP8 1040 aa20■□□□□ 0.79
VPS28-207ENST00000526977 LIMS2Q7Z4I7 341 aa20■□□□□ 0.79
VPS28-207ENST00000526977 TOP6BLQ8N6T0 577 aa20■□□□□ 0.79
VPS28-207ENST00000526977 ALG3Q92685 438 aa20■□□□□ 0.79
VPS28-207ENST00000526977 BTBD6Q96KE9 485 aa20■□□□□ 0.79
VPS28-207ENST00000526977 FAM193BQ96PV7 902 aaPredicted RBP20■□□□□ 0.79
VPS28-207ENST00000526977 AP1M1Q9BXS5 423 aa20■□□□□ 0.79
VPS28-207ENST00000526977 TBC1D13Q9NVG8 400 aa20■□□□□ 0.79
VPS28-207ENST00000526977 SCN1AP35498 2009 aa20■□□□□ 0.79
VPS28-207ENST00000526977 TTC3P53804 2025 aa20■□□□□ 0.79
VPS28-207ENST00000526977 CENPCQ03188 943 aa20■□□□□ 0.79
VPS28-207ENST00000526977 MAP9Q49MG5 647 aa20■□□□□ 0.79
VPS28-207ENST00000526977 TRIM72Q6ZMU5 477 aa20■□□□□ 0.79
VPS28-207ENST00000526977 UNC93AQ86WB7 457 aa20■□□□□ 0.79
VPS28-207ENST00000526977 TMEM176AQ96HP8 235 aa20■□□□□ 0.79
VPS28-207ENST00000526977 CASD1Q96PB1 797 aa20■□□□□ 0.79
VPS28-207ENST00000526977 MRPL9Q9BYD2 267 aaKnown RBP20■□□□□ 0.79
VPS28-207ENST00000526977 DNAI2Q9GZS0 605 aa20■□□□□ 0.79
VPS28-207ENST00000526977 CARD9Q9H257 536 aa20■□□□□ 0.79
VPS28-207ENST00000526977 KIAA1257Q9ULG3 409 aa20■□□□□ 0.79
VPS28-207ENST00000526977 MIF4GDA9UHW6 222 aaKnown RBP19.99■□□□□ 0.79
VPS28-207ENST00000526977 B3GAT3O94766 335 aa19.99■□□□□ 0.79
VPS28-207ENST00000526977 GLI1P08151 1106 aa19.99■□□□□ 0.79
VPS28-207ENST00000526977 RAD23BP54727 409 aa19.99■□□□□ 0.79
VPS28-207ENST00000526977 CASP8Q14790 479 aa19.99■□□□□ 0.79
VPS28-207ENST00000526977 KLHL7Q8IXQ5 586 aa19.99■□□□□ 0.79
VPS28-207ENST00000526977 WHAMMQ8TF30 809 aa19.99■□□□□ 0.79
VPS28-207ENST00000526977 UBE2Q2Q8WVN8 375 aa19.99■□□□□ 0.79
VPS28-207ENST00000526977 ZNF606Q8WXB4 792 aa19.99■□□□□ 0.79
VPS28-207ENST00000526977 NT5C1AQ9BXI3 368 aa19.99■□□□□ 0.79
VPS28-207ENST00000526977 UBXN6Q9BZV1 441 aa19.99■□□□□ 0.79
VPS28-207ENST00000526977 AVENQ9NQS1 362 aaPredicted RBP19.99■□□□□ 0.79
VPS28-207ENST00000526977 MKI67P46013 3256 aaKnown RBP19.98■□□□□ 0.79
VPS28-207ENST00000526977 KRIT1O00522 736 aa19.98■□□□□ 0.79
VPS28-207ENST00000526977 CYB561D2O14569 222 aa19.98■□□□□ 0.79
VPS28-207ENST00000526977 THAP12O43422 761 aa19.98■□□□□ 0.79
VPS28-207ENST00000526977 SSTR3P32745 418 aaPredicted RBP19.98■□□□□ 0.79
VPS28-207ENST00000526977 NSFP46459 744 aaKnown RBP19.98■□□□□ 0.79
VPS28-207ENST00000526977 AARSP49588 968 aaKnown RBP eCLIP19.98■□□□□ 0.791e-6■■■■■ 36.1
VPS28-207ENST00000526977 PEX5P50542 639 aa19.98■□□□□ 0.79
VPS28-207ENST00000526977 NDST1P52848 882 aa19.98■□□□□ 0.79
VPS28-207ENST00000526977 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.98■□□□□ 0.79
VPS28-207ENST00000526977 ZNF280BQ86YH2 543 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms