RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 KIAA0408Q6ZU52 694 aa8.66□□□□□ -1.02
LSM1-202ENST00000520286 ELOA2Q8IYF1 753 aaPredicted RBP8.66□□□□□ -1.02
LSM1-202ENST00000520286 OR52N2Q8NGI0 321 aa8.66□□□□□ -1.02
LSM1-202ENST00000520286 ZSCAN31Q96LW9 406 aaPredicted RBP8.66□□□□□ -1.02
LSM1-202ENST00000520286 SLC46A1Q96NT5 459 aa8.66□□□□□ -1.02
LSM1-202ENST00000520286 SMOQ99835 787 aa8.66□□□□□ -1.02
LSM1-202ENST00000520286 EIF2AK1Q9BQI3 630 aaKnown RBP8.66□□□□□ -1.02
LSM1-202ENST00000520286 MESP1Q9BRJ9 268 aa8.66□□□□□ -1.02
LSM1-202ENST00000520286 TTYH3Q9C0H2 523 aa8.66□□□□□ -1.02
LSM1-202ENST00000520286 HECAQ9UBI9 543 aaPredicted RBP8.66□□□□□ -1.02
LSM1-202ENST00000520286 CAPN11Q9UMQ6 739 aa8.66□□□□□ -1.02
LSM1-202ENST00000520286 CDYLQ9Y232 598 aa8.66□□□□□ -1.02
LSM1-202ENST00000520286 IPO5O00410 1097 aaKnown RBP8.65□□□□□ -1.02
LSM1-202ENST00000520286 POLRMTO00411 1230 aaKnown RBP8.65□□□□□ -1.02
LSM1-202ENST00000520286 NCAM2O15394 837 aa8.65□□□□□ -1.02
LSM1-202ENST00000520286 MFAP3LO75121 409 aa8.65□□□□□ -1.02
LSM1-202ENST00000520286 FCER1AP12319 257 aa8.65□□□□□ -1.02
LSM1-202ENST00000520286 IQCB1Q15051 598 aa8.65□□□□□ -1.02
LSM1-202ENST00000520286 MAPKAPK3Q16644 382 aa8.65□□□□□ -1.02
LSM1-202ENST00000520286 TIGD6Q17RP2 521 aa8.65□□□□□ -1.02
LSM1-202ENST00000520286 FCRL6Q6DN72 434 aa8.65□□□□□ -1.02
LSM1-202ENST00000520286 ZFPM1Q8IX07 1006 aa8.65□□□□□ -1.02
LSM1-202ENST00000520286 LGI4Q8N135 537 aa8.65□□□□□ -1.02
LSM1-202ENST00000520286 CFAP52Q8N1V2 620 aa8.65□□□□□ -1.02
LSM1-202ENST00000520286 SMCR8Q8TEV9 937 aaPredicted RBP8.65□□□□□ -1.02
LSM1-202ENST00000520286 SLC38A3Q99624 504 aa8.65□□□□□ -1.02
LSM1-202ENST00000520286 PRPF18Q99633 342 aaKnown RBP8.65□□□□□ -1.02
LSM1-202ENST00000520286 FAM167BQ9BTA0 163 aa8.65□□□□□ -1.02
LSM1-202ENST00000520286 KATNAL1Q9BW62 490 aa8.65□□□□□ -1.02
LSM1-202ENST00000520286 PCDHAC1Q9H158 963 aa8.65□□□□□ -1.02
LSM1-202ENST00000520286 ETAA1Q9NY74 926 aa8.65□□□□□ -1.02
LSM1-202ENST00000520286 ZMYND8Q9ULU4 1186 aaPredicted RBP8.65□□□□□ -1.02
LSM1-202ENST00000520286 SCAF8Q9UPN6 1271 aaKnown RBP8.65□□□□□ -1.02
LSM1-202ENST00000520286 ATP11BQ9Y2G3 1177 aa8.65□□□□□ -1.02
LSM1-202ENST00000520286 URB2Q14146 1524 aaKnown RBP8.64□□□□□ -1.03
LSM1-202ENST00000520286 CFTRP13569 1480 aa8.64□□□□□ -1.03
LSM1-202ENST00000520286 DCLK1O15075 740 aa8.64□□□□□ -1.03
LSM1-202ENST00000520286 IPO13O94829 963 aaKnown RBP8.64□□□□□ -1.03
LSM1-202ENST00000520286 TSPAN15O95858 294 aa8.64□□□□□ -1.03
LSM1-202ENST00000520286 PYGLP06737 847 aa8.64□□□□□ -1.03
LSM1-202ENST00000520286 INHBBP09529 407 aa8.64□□□□□ -1.03
LSM1-202ENST00000520286 EGR1P18146 543 aa8.64□□□□□ -1.03
LSM1-202ENST00000520286 KCNC1P48547 511 aa8.64□□□□□ -1.03
LSM1-202ENST00000520286 PTDSS1P48651 473 aaKnown RBP8.64□□□□□ -1.03
LSM1-202ENST00000520286 PIGFQ07326 219 aa8.64□□□□□ -1.03
LSM1-202ENST00000520286 BOP1Q14137 746 aaKnown RBP8.64□□□□□ -1.03
LSM1-202ENST00000520286 MAPRE1Q15691 268 aaKnown RBP8.64□□□□□ -1.03
LSM1-202ENST00000520286 ELAVL1Q15717 326 aaKnown RBP8.64□□□□□ -1.03
LSM1-202ENST00000520286 NPY5RQ15761 445 aa8.64□□□□□ -1.03
LSM1-202ENST00000520286 TANGO2Q6ICL3 276 aa8.64□□□□□ -1.03
LSM1-202ENST00000520286 SULT6B1Q6IMI4 303 aa8.64□□□□□ -1.03
LSM1-202ENST00000520286 LIN54Q6MZP7 749 aa8.64□□□□□ -1.03
LSM1-202ENST00000520286 TAX1BP1Q86VP1 789 aa8.64□□□□□ -1.03
LSM1-202ENST00000520286 IL17REQ8NFR9 667 aa8.64□□□□□ -1.03
LSM1-202ENST00000520286 STT3BQ8TCJ2 826 aa8.64□□□□□ -1.03
LSM1-202ENST00000520286 PLA2G3Q9NZ20 509 aa8.64□□□□□ -1.03
LSM1-202ENST00000520286 NPIPB6E9PJ23 425 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 EIF3FO00303 357 aaPredicted RBP8.63□□□□□ -1.03
LSM1-202ENST00000520286 ASNA1O43681 348 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 TRIM13O60858 407 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 GCSHP23434 173 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 TOB1P50616 345 aaPredicted RBP8.63□□□□□ -1.03
LSM1-202ENST00000520286 KRT17Q04695 432 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 TAF12Q16514 161 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 EEF1AKMT2Q5JPI9 291 aaKnown RBP8.63□□□□□ -1.03
LSM1-202ENST00000520286 METTL24Q5JXM2 366 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 TMTC4Q5T4D3 741 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 RAP1GAP2Q684P5 730 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 SLC30A10Q6XR72 485 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 KRT73Q86Y46 540 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 GATAD2AQ86YP4 633 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 Q8N3U1 123 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 MDGA1Q8NFP4 955 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 EID2BQ96D98 161 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 MARS2Q96GW9 593 aaKnown RBP8.63□□□□□ -1.03
LSM1-202ENST00000520286 MPP4Q96JB8 637 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 OR14A2Q96R54 314 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 TRIB1Q96RU8 372 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 NELL2Q99435 816 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 TERF2IPQ9NYB0 399 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 DKK4Q9UBT3 224 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 SHOC2Q9UQ13 582 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 SH3BP1Q9Y3L3 701 aa8.63□□□□□ -1.03
LSM1-202ENST00000520286 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.62□□□□□ -1.03
LSM1-202ENST00000520286 RRN3P2A6NIE6 340 aa8.62□□□□□ -1.03
LSM1-202ENST00000520286 PRRT4C9JH25 899 aa8.62□□□□□ -1.03
LSM1-202ENST00000520286 ATXN1LP0C7T5 689 aaKnown RBP8.62□□□□□ -1.03
LSM1-202ENST00000520286 HK1P19367 917 aa8.62□□□□□ -1.03
LSM1-202ENST00000520286 CHRM3P20309 590 aa8.62□□□□□ -1.03
LSM1-202ENST00000520286 ATICP31939 592 aa8.62□□□□□ -1.03
LSM1-202ENST00000520286 SATB1Q01826 763 aa8.62□□□□□ -1.03
LSM1-202ENST00000520286 ZNF844Q08AG5 666 aa8.62□□□□□ -1.03
LSM1-202ENST00000520286 MGAT5BQ3V5L5 792 aa8.62□□□□□ -1.03
LSM1-202ENST00000520286 NT5DC1Q5TFE4 455 aa8.62□□□□□ -1.03
LSM1-202ENST00000520286 TCERG1LQ5VWI1 586 aa8.62□□□□□ -1.03
LSM1-202ENST00000520286 TAPT1Q6NXT6 567 aa8.62□□□□□ -1.03
LSM1-202ENST00000520286 KCTD20Q7Z5Y7 419 aa8.62□□□□□ -1.03
LSM1-202ENST00000520286 ZNF280BQ86YH2 543 aa8.62□□□□□ -1.03
LSM1-202ENST00000520286 CCDC28AQ8IWP9 274 aa8.62□□□□□ -1.03
LSM1-202ENST00000520286 MB21D1Q8N884 522 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms