RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 SMARCB1Q12824 385 aa22.33■■□□□ 1.17
LSM6-207ENST00000515311 ORC1Q13415 861 aa22.33■■□□□ 1.17
LSM6-207ENST00000515311 ARID5BQ14865 1188 aa22.33■■□□□ 1.17
LSM6-207ENST00000515311 ZNF697Q5TEC3 545 aa22.33■■□□□ 1.17
LSM6-207ENST00000515311 CNGA4Q8IV77 575 aa22.33■■□□□ 1.17
LSM6-207ENST00000515311 MYCBPAPQ8TBZ2 947 aa22.33■■□□□ 1.17
LSM6-207ENST00000515311 MICAL1Q8TDZ2 1067 aa22.33■■□□□ 1.17
LSM6-207ENST00000515311 CRTAC1Q9NQ79 661 aa22.33■■□□□ 1.17
LSM6-207ENST00000515311 AIPL1Q9NZN9 384 aa22.33■■□□□ 1.17
LSM6-207ENST00000515311 PTPRDP23468 1912 aa22.32■■□□□ 1.16
LSM6-207ENST00000515311 HIDE1A8MVS5 230 aa22.32■■□□□ 1.16
LSM6-207ENST00000515311 TEX28O15482 410 aa22.32■■□□□ 1.16
LSM6-207ENST00000515311 ATP2C2O75185 946 aa22.32■■□□□ 1.16
LSM6-207ENST00000515311 GFPT2O94808 682 aa22.32■■□□□ 1.16
LSM6-207ENST00000515311 ADH1AP07327 375 aa22.32■■□□□ 1.16
LSM6-207ENST00000515311 FERP16591 822 aa22.32■■□□□ 1.16
LSM6-207ENST00000515311 RPL17P18621 184 aaKnown RBP22.32■■□□□ 1.16
LSM6-207ENST00000515311 OR1D2P34982 312 aa22.32■■□□□ 1.16
LSM6-207ENST00000515311 CLCN1P35523 988 aa22.32■■□□□ 1.16
LSM6-207ENST00000515311 KRT9P35527 623 aa22.32■■□□□ 1.16
LSM6-207ENST00000515311 PTK2Q05397 1052 aa22.32■■□□□ 1.16
LSM6-207ENST00000515311 GPR17Q13304 367 aa22.32■■□□□ 1.16
LSM6-207ENST00000515311 RAB33AQ14088 237 aa22.32■■□□□ 1.16
LSM6-207ENST00000515311 NFE2Q16621 373 aaPredicted RBP22.32■■□□□ 1.16
LSM6-207ENST00000515311 SFMBT2Q5VUG0 894 aa22.32■■□□□ 1.16
LSM6-207ENST00000515311 LRCH3Q96II8 777 aa22.32■■□□□ 1.16
LSM6-207ENST00000515311 HEXIM2Q96MH2 286 aaKnown RBP22.32■■□□□ 1.16
LSM6-207ENST00000515311 TMEM209Q96SK2 561 aa22.32■■□□□ 1.16
LSM6-207ENST00000515311 DNAJC7Q99615 494 aa22.32■■□□□ 1.16
LSM6-207ENST00000515311 LMCD1Q9NZU5 365 aa22.32■■□□□ 1.16
LSM6-207ENST00000515311 MYO9BQ13459 2157 aa22.31■■□□□ 1.16
LSM6-207ENST00000515311 MYBPHLA2RUH7 354 aa22.31■■□□□ 1.16
LSM6-207ENST00000515311 AKR1B15C9JRZ8 316 aaPredicted RBP22.31■■□□□ 1.16
LSM6-207ENST00000515311 RFXAPO00287 272 aa22.31■■□□□ 1.16
LSM6-207ENST00000515311 ADAM12O43184 909 aa22.31■■□□□ 1.16
LSM6-207ENST00000515311 C1RP00736 705 aa22.31■■□□□ 1.16
LSM6-207ENST00000515311 VDRP11473 427 aa22.31■■□□□ 1.16
LSM6-207ENST00000515311 CPB1P15086 417 aa22.31■■□□□ 1.16
LSM6-207ENST00000515311 CA8P35219 290 aa22.31■■□□□ 1.16
LSM6-207ENST00000515311 ROR1Q01973 937 aa22.31■■□□□ 1.16
LSM6-207ENST00000515311 TPGS2Q68CL5 300 aa22.31■■□□□ 1.16
LSM6-207ENST00000515311 LRRTM3Q86VH5 581 aa22.31■■□□□ 1.16
LSM6-207ENST00000515311 OR8K1Q8NGG5 319 aa22.31■■□□□ 1.16
LSM6-207ENST00000515311 C2orf15Q8WU43 125 aaKnown RBP22.31■■□□□ 1.16
LSM6-207ENST00000515311 KLHL5Q96PQ7 755 aa22.31■■□□□ 1.16
LSM6-207ENST00000515311 GTF3C4Q9UKN8 822 aa22.31■■□□□ 1.16
LSM6-207ENST00000515311 PCDHGC5Q9Y5F6 944 aa22.31■■□□□ 1.16
LSM6-207ENST00000515311 GOLGA6L6A8MZA4 724 aa22.3■■□□□ 1.16
LSM6-207ENST00000515311 OR4Q2P0C623 313 aa22.3■■□□□ 1.16
LSM6-207ENST00000515311 GNA15P30679 374 aa22.3■■□□□ 1.16
LSM6-207ENST00000515311 HNRNPH3P31942 346 aaKnown RBP22.3■■□□□ 1.16
LSM6-207ENST00000515311 STILQ15468 1287 aa22.3■■□□□ 1.16
LSM6-207ENST00000515311 ASIC2Q16515 512 aa22.3■■□□□ 1.16
LSM6-207ENST00000515311 SLC39A12Q504Y0 691 aa22.3■■□□□ 1.16
LSM6-207ENST00000515311 SGO2Q562F6 1265 aa22.3■■□□□ 1.16
LSM6-207ENST00000515311 MDH1BQ5I0G3 518 aa22.3■■□□□ 1.16
LSM6-207ENST00000515311 HABP4Q5JVS0 413 aaKnown RBP22.3■■□□□ 1.16
LSM6-207ENST00000515311 ARHGAP17Q68EM7 881 aa22.3■■□□□ 1.16
LSM6-207ENST00000515311 C4orf50Q6ZRC1 276 aa22.3■■□□□ 1.16
LSM6-207ENST00000515311 IRF2BP2Q7Z5L9 587 aa22.3■■□□□ 1.16
LSM6-207ENST00000515311 SLC47A2Q86VL8 602 aa22.3■■□□□ 1.16
LSM6-207ENST00000515311 C12orf29Q8N999 325 aa22.3■■□□□ 1.16
LSM6-207ENST00000515311 ZNF461Q8TAF7 563 aa22.3■■□□□ 1.16
LSM6-207ENST00000515311 PCED1BQ96HM7 432 aa22.3■■□□□ 1.16
LSM6-207ENST00000515311 ABCB6Q9NP58 842 aa22.3■■□□□ 1.16
LSM6-207ENST00000515311 MAFFQ9ULX9 164 aa22.3■■□□□ 1.16
LSM6-207ENST00000515311 PLXNA3P51805 1871 aa22.3■■□□□ 1.16
LSM6-207ENST00000515311 WDR27A2RRH5 827 aa22.29■■□□□ 1.16
LSM6-207ENST00000515311 ABLIM3O94929 683 aa22.29■■□□□ 1.16
LSM6-207ENST00000515311 CD19P15391 556 aa22.29■■□□□ 1.16
LSM6-207ENST00000515311 CYP11B1P15538 503 aa22.29■■□□□ 1.16
LSM6-207ENST00000515311 PRKCIP41743 596 aa22.29■■□□□ 1.16
LSM6-207ENST00000515311 PDE6CP51160 858 aa22.29■■□□□ 1.16
LSM6-207ENST00000515311 ARPP19P56211 112 aa22.29■■□□□ 1.16
LSM6-207ENST00000515311 GRIN2CQ14957 1233 aa22.29■■□□□ 1.16
LSM6-207ENST00000515311 SPC24Q8NBT2 197 aa22.29■■□□□ 1.16
LSM6-207ENST00000515311 EPS8L1Q8TE68 723 aa22.29■■□□□ 1.16
LSM6-207ENST00000515311 TFAP2BQ92481 460 aa22.29■■□□□ 1.16
LSM6-207ENST00000515311 MYLPFQ96A32 169 aa22.29■■□□□ 1.16
LSM6-207ENST00000515311 CYFIP2Q96F07 1278 aa22.29■■□□□ 1.16
LSM6-207ENST00000515311 FUBP3Q96I24 572 aaKnown RBP eCLIP22.29■■□□□ 1.162e-7■■■□□ 16.1
LSM6-207ENST00000515311 HNRNPABQ99729 332 aaKnown RBP22.29■■□□□ 1.16
LSM6-207ENST00000515311 PRDM12Q9H4Q4 367 aa22.29■■□□□ 1.16
LSM6-207ENST00000515311 ABHD10Q9NUJ1 306 aa22.29■■□□□ 1.16
LSM6-207ENST00000515311 TMLHEQ9NVH6 421 aa22.29■■□□□ 1.16
LSM6-207ENST00000515311 CDH23Q9H251 3354 aa22.29■■□□□ 1.16
LSM6-207ENST00000515311 O00370 1275 aa22.28■■□□□ 1.16
LSM6-207ENST00000515311 MED7O43513 233 aa22.28■■□□□ 1.16
LSM6-207ENST00000515311 CSPG5O95196 566 aa22.28■■□□□ 1.16
LSM6-207ENST00000515311 POU3F3P20264 500 aaPredicted RBP22.28■■□□□ 1.16
LSM6-207ENST00000515311 ADKP55263 362 aaKnown RBP22.28■■□□□ 1.16
LSM6-207ENST00000515311 ARID5AQ03989 594 aa22.28■■□□□ 1.16
LSM6-207ENST00000515311 MEA1Q16626 185 aa22.28■■□□□ 1.16
LSM6-207ENST00000515311 CCDC142Q17RM4 750 aa22.28■■□□□ 1.16
LSM6-207ENST00000515311 TSR1Q2NL82 804 aaKnown RBP22.28■■□□□ 1.16
LSM6-207ENST00000515311 CFAP221Q4G0U5 840 aa22.28■■□□□ 1.16
LSM6-207ENST00000515311 E4F1Q66K89 784 aaPredicted RBP22.28■■□□□ 1.16
LSM6-207ENST00000515311 ZNF677Q86XU0 584 aa22.28■■□□□ 1.16
LSM6-207ENST00000515311 FUKQ8N0W3 1084 aa22.28■■□□□ 1.16
LSM6-207ENST00000515311 TC2NQ8N9U0 490 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms