RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 MIIPQ5JXC2 388 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 LRRC8EQ6NSJ5 796 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 C11orf63Q6NUN7 778 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 RAB44Q7Z6P3 723 aaPredicted RBP11.75□□□□□ -0.53
TCOF1-211ENST00000513346 PARK7Q99497 189 aaKnown RBP11.75□□□□□ -0.53
TCOF1-211ENST00000513346 KLHL11Q9NVR0 708 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 KCNH4Q9UQ05 1017 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 TCRBV5S4A2TA0A5A2 114 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 ZNF189O75820 626 aaPredicted RBP11.74□□□□□ -0.53
TCOF1-211ENST00000513346 CSPG5O95196 566 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 FECHP22830 423 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 EIF3EP60228 445 aaKnown RBP11.74□□□□□ -0.53
TCOF1-211ENST00000513346 TNFAIP2Q03169 654 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 PRPSAP1Q14558 356 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 TTC39BQ5VTQ0 682 aaPredicted RBP11.74□□□□□ -0.53
TCOF1-211ENST00000513346 ANKRD13AQ8IZ07 590 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 POLLQ9UGP5 575 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 SLC12A6Q9UHW9 1150 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 HEY1Q9Y5J3 304 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 ASB14A6NK59 587 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 FOXN3O00409 490 aaPredicted RBP11.74□□□□□ -0.53
TCOF1-211ENST00000513346 TNPO2O14787 897 aaKnown RBP11.74□□□□□ -0.53
TCOF1-211ENST00000513346 RTN3O95197 1032 aaPredicted RBP11.74□□□□□ -0.53
TCOF1-211ENST00000513346 CASP2P42575 452 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 BAATQ14032 418 aaPredicted RBP11.74□□□□□ -0.53
TCOF1-211ENST00000513346 HOMEZQ8IX15 550 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 GALNT15Q8N3T1 639 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 ZNF668Q96K58 619 aaPredicted RBP11.74□□□□□ -0.53
TCOF1-211ENST00000513346 CCDC90BQ9GZT6 254 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 JMJD4Q9H9V9 463 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 MYOZ2Q9NPC6 264 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 DDX28Q9NUL7 540 aaKnown RBP11.74□□□□□ -0.53
TCOF1-211ENST00000513346 PCMTD2Q9NV79 361 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 ZC3H7BQ9UGR2 993 aaKnown RBP11.74□□□□□ -0.53
TCOF1-211ENST00000513346 PCSK1NQ9UHG2 260 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 PRR12Q9ULL5 1215 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 KIF13AQ9H1H9 1805 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 SIGLEC1Q9BZZ2 1709 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 KIAA0391O15091 583 aaKnown RBP11.74□□□□□ -0.53
TCOF1-211ENST00000513346 MRPS15P82914 257 aaKnown RBP11.74□□□□□ -0.53
TCOF1-211ENST00000513346 MCL1Q07820 350 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 OASLQ15646 514 aaKnown RBP11.74□□□□□ -0.53
TCOF1-211ENST00000513346 RNF220Q5VTB9 566 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 EXOC3L1Q86VI1 746 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 ZNF75CPQ92670 426 aaPredicted RBP11.74□□□□□ -0.53
TCOF1-211ENST00000513346 PURBQ96QR8 312 aaKnown RBP11.74□□□□□ -0.53
TCOF1-211ENST00000513346 POLR3CQ9BUI4 534 aaPredicted RBP11.74□□□□□ -0.53
TCOF1-211ENST00000513346 MRPL1Q9BYD6 325 aaKnown RBP11.74□□□□□ -0.53
TCOF1-211ENST00000513346 C2orf40Q9H1Z8 148 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 TMCO1Q9UM00 188 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 ESYT2A0FGR8 921 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 A8MUI8 341 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 SMNDC1O75940 238 aaKnown RBP eCLIP11.74□□□□□ -0.53
TCOF1-211ENST00000513346 KRT8P05787 483 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 FAM58BPP0C7Q3 252 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 TAP1Q03518 808 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 RRP1BQ14684 758 aaKnown RBP11.74□□□□□ -0.53
TCOF1-211ENST00000513346 KIF19Q2TAC6 998 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 SETD3Q86TU7 594 aaPredicted RBP11.74□□□□□ -0.53
TCOF1-211ENST00000513346 PPIL6Q8IXY8 311 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 NDUFAF2Q8N183 169 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 CEP19Q96LK0 163 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 ASNSD1Q9NWL6 643 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 NINJ2Q9NZG7 142 aa11.74□□□□□ -0.53
TCOF1-211ENST00000513346 BTNL10A8MVZ5 291 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 TRIM49D1C9J1S8 452 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 EPHB6O15197 1021 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 P4HA2O15460 535 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 KRT36O76013 467 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 CELF2O95319 508 aaKnown RBP11.73□□□□□ -0.53
TCOF1-211ENST00000513346 TNFAIP8O95379 198 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 S100BP04271 92 aaPredicted RBP11.73□□□□□ -0.53
TCOF1-211ENST00000513346 KCNA4P22459 653 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 SP100P23497 879 aaPredicted RBP11.73□□□□□ -0.53
TCOF1-211ENST00000513346 DUPD1Q68J44 220 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 CCNYL1Q8N7R7 359 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 AGR3Q8TD06 166 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 RAET1EQ8TD07 263 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 GDPD5Q8WTR4 605 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 CPA5Q8WXQ8 436 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 SENP7Q9BQF6 1050 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 TMEM39BQ9GZU3 492 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 GRID1Q9ULK0 1009 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 INPP5FQ9Y2H2 1132 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 ACTL7BQ9Y614 415 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 ATP8B3O60423 1300 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 C5orf60A6NFR6 353 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 PFDN6O15212 129 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 GSTA4O15217 222 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 EIF3DO15371 548 aaKnown RBP eCLIP11.73□□□□□ -0.53
TCOF1-211ENST00000513346 APOA1P02647 267 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 SMARCA1P28370 1054 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 C16orf72Q14CZ0 275 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 TTC33Q6PID6 262 aaPredicted RBP11.73□□□□□ -0.53
TCOF1-211ENST00000513346 C1orf228Q6PIY5 440 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 C4orf50Q6ZRC1 276 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 PATL1Q86TB9 770 aaKnown RBP11.73□□□□□ -0.53
TCOF1-211ENST00000513346 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.73□□□□□ -0.53
TCOF1-211ENST00000513346 TTC8Q8TAM2 541 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 RNF139Q8WU17 664 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms