RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 SMURF2Q9HAU4 748 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 MKNK2Q9HBH9 465 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 H2AFY2Q9P0M6 372 aaPredicted RBP3.72□□□□□ -1.81
USP53-205ENST00000509769 POLKQ9UBT6 870 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 GGA1Q9UJY5 639 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 PCDHB13Q9Y5F0 798 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 PTPDC1A2A3K4 754 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 RASA4BC9J798 803 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 PSMD11O00231 422 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 ENC1O14682 589 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 TM9SF1O15321 606 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 PJA2O43164 708 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 RASA4O43374 803 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 TJP3O95049 919 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 POLR2MP0CAP2 368 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 MYBL2P10244 700 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 MYL2P10916 166 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 RPL17P18621 184 aaKnown RBP3.72□□□□□ -1.81
USP53-205ENST00000509769 VARSP26640 1264 aaKnown RBP3.72□□□□□ -1.81
USP53-205ENST00000509769 PRKAR1BP31321 381 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 YWHABP31946 246 aaKnown RBP3.72□□□□□ -1.81
USP53-205ENST00000509769 IFNAR2P48551 515 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 VSNL1P62760 191 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 CDC16Q13042 620 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 NAB1Q13506 487 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 TFDP2Q14188 446 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 GALNT3Q14435 633 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 DMC1Q14565 340 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 MAN2A1Q16706 1144 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 ZRANB3Q5FWF4 1079 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 ARHGAP17Q68EM7 881 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 C1orf94Q6P1W5 598 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 CASC4Q6P4E1 433 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 ZCCHC12Q6PEW1 402 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 PADI6Q6TGC4 694 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 CYFIP1Q7L576 1253 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 RAB43Q86YS6 212 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 CCDC24Q8N4L8 307 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 TTC16Q8NEE8 873 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 MTMR9Q96QG7 549 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 NUDT12Q9BQG2 462 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 YTHDF1Q9BYJ9 559 aaKnown RBP3.72□□□□□ -1.81
USP53-205ENST00000509769 MUC13Q9H3R2 512 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 DCTPP1Q9H773 170 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 MARCH7Q9H992 704 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 PNO1Q9NRX1 252 aaKnown RBP3.72□□□□□ -1.81
USP53-205ENST00000509769 ZNF219Q9P2Y4 722 aaPredicted RBP3.72□□□□□ -1.81
USP53-205ENST00000509769 ZBTB21Q9ULJ3 1066 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 A0A1W2PQC6 194 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 FAM92AA1XBS5 289 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 SFI1A8K8P3 1242 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 MEI4A8MW99 385 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 MDM4O15151 490 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 ATP9AO75110 1047 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 PHF2O75151 1096 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 ATP6V1G1O75348 118 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 NDUFA10O95299 355 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 VNN2O95498 520 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 CSN2P05814 226 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 HMOX1P09601 288 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 SBK2P0C263 348 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 ATF4P18848 351 aaPredicted RBP3.72□□□□□ -1.81
USP53-205ENST00000509769 RPS6KB1P23443 525 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 CSNK2BP67870 215 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 GTF2IP78347 998 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 STX4Q12846 297 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 RASA3Q14644 834 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 SURF1Q15526 300 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 TSNQ15631 228 aaKnown RBP3.72□□□□□ -1.81
USP53-205ENST00000509769 PARP6Q2NL67 630 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 DEFB115Q30KQ5 88 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 TTMPQ5BVD1 217 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 TTC23Q5W5X9 447 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 FBXW10Q5XX13 1052 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 KCTD16Q68DU8 428 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 FAM92BQ6ZTR7 304 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 DNAJB7Q7Z6W7 309 aaPredicted RBP3.72□□□□□ -1.81
USP53-205ENST00000509769 TRIM50Q86XT4 487 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 TMPRSS6Q8IU80 811 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 RHPN2Q8IUC4 686 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 CCNJLQ8IV13 435 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 MAB21L3Q8N8X9 362 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 ADAM32Q8TC27 787 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 RORBQ92753 470 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 TSPAN17Q96FV3 270 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 KLHL32Q96NJ5 620 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 HTATIP2Q9BUP3 242 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 OSBPL11Q9BXB4 747 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 DCLK3Q9C098 648 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 ELAC1Q9H777 363 aaKnown RBP3.72□□□□□ -1.81
USP53-205ENST00000509769 RRAGCQ9HB90 399 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 OLA1Q9NTK5 396 aaKnown RBP3.72□□□□□ -1.81
USP53-205ENST00000509769 GALNT8Q9NY28 637 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 DDX56Q9NY93 547 aaKnown RBP3.72□□□□□ -1.81
USP53-205ENST00000509769 SH3BP4Q9P0V3 963 aa3.72□□□□□ -1.81
USP53-205ENST00000509769 FAM32AQ9Y421 112 aaKnown RBP3.72□□□□□ -1.81
USP53-205ENST00000509769 POLR3HQ9Y535 204 aaPredicted RBP3.72□□□□□ -1.81
USP53-205ENST00000509769 ABCC12Q96J65 1359 aa3.71□□□□□ -1.81
USP53-205ENST00000509769 PPIP5K1Q6PFW1 1433 aa3.71□□□□□ -1.81
USP53-205ENST00000509769 PIPSLA2A3N6 862 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms