RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 TMLHEQ9NVH6 421 aa31.56■■■□□ 2.64
LIMCH1-211ENST00000509638 MYBPHLA2RUH7 354 aa31.55■■■□□ 2.64
LIMCH1-211ENST00000509638 EPCAMP16422 314 aa31.55■■■□□ 2.64
LIMCH1-211ENST00000509638 POLR2FP61218 127 aaKnown RBP31.55■■■□□ 2.64
LIMCH1-211ENST00000509638 MDH1BQ5I0G3 518 aa31.55■■■□□ 2.64
LIMCH1-211ENST00000509638 ZNF461Q8TAF7 563 aa31.55■■■□□ 2.64
LIMCH1-211ENST00000509638 SHC3Q92529 594 aa31.55■■■□□ 2.64
LIMCH1-211ENST00000509638 LPIN3Q9BQK8 851 aa31.55■■■□□ 2.64
LIMCH1-211ENST00000509638 KRT5P13647 590 aa31.54■■■□□ 2.64
LIMCH1-211ENST00000509638 PTPN1P18031 435 aaKnown RBP31.54■■■□□ 2.64
LIMCH1-211ENST00000509638 TRIM21P19474 475 aaKnown RBP31.54■■■□□ 2.64
LIMCH1-211ENST00000509638 RAD23BP54727 409 aa31.54■■■□□ 2.64
LIMCH1-211ENST00000509638 RBM10P98175 930 aaKnown RBP31.54■■■□□ 2.64
LIMCH1-211ENST00000509638 TPGS2Q68CL5 300 aa31.54■■■□□ 2.64
LIMCH1-211ENST00000509638 VN1R2Q8NFZ6 395 aa31.54■■■□□ 2.64
LIMCH1-211ENST00000509638 SLC22A17Q8WUG5 538 aa31.54■■■□□ 2.64
LIMCH1-211ENST00000509638 TRIM5Q9C035 493 aa31.54■■■□□ 2.64
LIMCH1-211ENST00000509638 FSD2A1L4K1 749 aa31.53■■■□□ 2.64
LIMCH1-211ENST00000509638 MTMR11A4FU01 709 aa31.53■■■□□ 2.64
LIMCH1-211ENST00000509638 ABLIM3O94929 683 aa31.53■■■□□ 2.64
LIMCH1-211ENST00000509638 SPATA31D3P0C874 917 aa31.53■■■□□ 2.64
LIMCH1-211ENST00000509638 UVSSAQ2YD98 709 aa31.53■■■□□ 2.64
LIMCH1-211ENST00000509638 FAM171BQ6P995 826 aa31.53■■■□□ 2.64
LIMCH1-211ENST00000509638 SPATA31D4Q6ZUB0 917 aa31.53■■■□□ 2.64
LIMCH1-211ENST00000509638 SLC4A11Q8NBS3 891 aa31.53■■■□□ 2.64
LIMCH1-211ENST00000509638 RBBP8NLQ8NC74 664 aaPredicted RBP31.53■■■□□ 2.64
LIMCH1-211ENST00000509638 MYCBPAPQ8TBZ2 947 aa31.53■■■□□ 2.64
LIMCH1-211ENST00000509638 MYLPFQ96A32 169 aa31.53■■■□□ 2.64
LIMCH1-211ENST00000509638 NLRC4Q9NPP4 1024 aa31.53■■■□□ 2.64
LIMCH1-211ENST00000509638 ABI2Q9NYB9 513 aaPredicted RBP31.53■■■□□ 2.64
LIMCH1-211ENST00000509638 AFF4Q9UHB7 1163 aaKnown RBP31.53■■■□□ 2.64
LIMCH1-211ENST00000509638 FBXW11Q9UKB1 542 aa31.53■■■□□ 2.64
LIMCH1-211ENST00000509638 COL6A3P12111 3177 aa31.53■■■□□ 2.64
LIMCH1-211ENST00000509638 SPTBN5Q9NRC6 3674 aaKnown RBP31.52■■■□□ 2.64
LIMCH1-211ENST00000509638 VNN2O95498 520 aa31.52■■■□□ 2.64
LIMCH1-211ENST00000509638 PNMA6AP0CW24 399 aaPredicted RBP31.52■■■□□ 2.64
LIMCH1-211ENST00000509638 ADCY1Q08828 1119 aa31.52■■■□□ 2.64
LIMCH1-211ENST00000509638 MAPRE1Q15691 268 aaKnown RBP31.52■■■□□ 2.64
LIMCH1-211ENST00000509638 NFE2Q16621 373 aaPredicted RBP31.52■■■□□ 2.64
LIMCH1-211ENST00000509638 LILRA6Q6PI73 481 aa31.52■■■□□ 2.64
LIMCH1-211ENST00000509638 CRYBG2Q8N1P7 616 aa31.52■■■□□ 2.64
LIMCH1-211ENST00000509638 EFHBQ8N7U6 833 aa31.52■■■□□ 2.64
LIMCH1-211ENST00000509638 TMEM176AQ96HP8 235 aa31.52■■■□□ 2.64
LIMCH1-211ENST00000509638 GPR88Q9GZN0 384 aa31.52■■■□□ 2.64
LIMCH1-211ENST00000509638 DNAI2Q9GZS0 605 aa31.52■■■□□ 2.64
LIMCH1-211ENST00000509638 FAM49BQ9NUQ9 324 aa31.52■■■□□ 2.64
LIMCH1-211ENST00000509638 DAAM1Q9Y4D1 1078 aa31.52■■■□□ 2.64
LIMCH1-211ENST00000509638 F8VZ95 297 aa31.51■■■□□ 2.64
LIMCH1-211ENST00000509638 ATF2P15336 505 aa31.51■■■□□ 2.64
LIMCH1-211ENST00000509638 ZNF132P52740 706 aa31.51■■■□□ 2.64
LIMCH1-211ENST00000509638 DRAP1Q14919 205 aaPredicted RBP31.51■■■□□ 2.64
LIMCH1-211ENST00000509638 C12orf29Q8N999 325 aa31.51■■■□□ 2.64
LIMCH1-211ENST00000509638 PCED1BQ96HM7 432 aa31.51■■■□□ 2.64
LIMCH1-211ENST00000509638 MAN1C1Q9NR34 630 aa31.51■■■□□ 2.64
LIMCH1-211ENST00000509638 CNTN6Q9UQ52 1028 aa31.51■■■□□ 2.64
LIMCH1-211ENST00000509638 MYH10P35580 1976 aa31.51■■■□□ 2.64
LIMCH1-211ENST00000509638 LINC01565O15544 149 aa31.51■■■□□ 2.63
LIMCH1-211ENST00000509638 GLP2RO95838 553 aa31.51■■■□□ 2.63
LIMCH1-211ENST00000509638 USP8P40818 1118 aa31.51■■■□□ 2.63
LIMCH1-211ENST00000509638 CYP27A1Q02318 531 aa31.51■■■□□ 2.63
LIMCH1-211ENST00000509638 SMARCB1Q12824 385 aa31.51■■■□□ 2.63
LIMCH1-211ENST00000509638 KCNC3Q14003 757 aa31.51■■■□□ 2.63
LIMCH1-211ENST00000509638 ATAD1Q8NBU5 361 aa31.51■■■□□ 2.63
LIMCH1-211ENST00000509638 STK33Q9BYT3 514 aa31.51■■■□□ 2.63
LIMCH1-211ENST00000509638 CEP72Q9P209 647 aa31.51■■■□□ 2.63
LIMCH1-211ENST00000509638 RNF225M0QZC1 329 aaPredicted RBP31.5■■■□□ 2.63
LIMCH1-211ENST00000509638 C1RP00736 705 aa31.5■■■□□ 2.63
LIMCH1-211ENST00000509638 CCDC85BQ15834 202 aaPredicted RBP31.5■■■□□ 2.63
LIMCH1-211ENST00000509638 C4orf50Q6ZRC1 276 aa31.5■■■□□ 2.63
LIMCH1-211ENST00000509638 SPATA2LQ8IUW3 424 aaPredicted RBP31.5■■■□□ 2.63
LIMCH1-211ENST00000509638 TTC9BQ8N6N2 239 aa31.5■■■□□ 2.63
LIMCH1-211ENST00000509638 KREMEN2Q8NCW0 462 aa31.5■■■□□ 2.63
LIMCH1-211ENST00000509638 SPAG5Q96R06 1193 aa31.5■■■□□ 2.63
LIMCH1-211ENST00000509638 PCDHB5Q9Y5E4 795 aa31.5■■■□□ 2.63
LIMCH1-211ENST00000509638 CCDC130P13994 396 aa31.49■■■□□ 2.63
LIMCH1-211ENST00000509638 LIN9Q5TKA1 542 aa31.49■■■□□ 2.63
LIMCH1-211ENST00000509638 CACNA2D4Q7Z3S7 1137 aa31.49■■■□□ 2.63
LIMCH1-211ENST00000509638 C2orf15Q8WU43 125 aaKnown RBP31.49■■■□□ 2.63
LIMCH1-211ENST00000509638 HEXIM2Q96MH2 286 aaKnown RBP31.49■■■□□ 2.63
LIMCH1-211ENST00000509638 RHOBTB2Q9BYZ6 727 aa31.49■■■□□ 2.63
LIMCH1-211ENST00000509638 CRISPLD1Q9H336 500 aa31.49■■■□□ 2.63
LIMCH1-211ENST00000509638 CYP4F11Q9HBI6 524 aa31.49■■■□□ 2.63
LIMCH1-211ENST00000509638 ITIH6Q6UXX5 1313 aa31.49■■■□□ 2.63
LIMCH1-211ENST00000509638 FOXN3O00409 490 aaPredicted RBP31.48■■■□□ 2.63
LIMCH1-211ENST00000509638 PRRG1O14668 218 aa31.48■■■□□ 2.63
LIMCH1-211ENST00000509638 SEC24AO95486 1093 aa31.48■■■□□ 2.63
LIMCH1-211ENST00000509638 JAM2P57087 298 aa31.48■■■□□ 2.63
LIMCH1-211ENST00000509638 SLC7A14Q8TBB6 771 aa31.48■■■□□ 2.63
LIMCH1-211ENST00000509638 SPPL2BQ8TCT7 592 aa31.48■■■□□ 2.63
LIMCH1-211ENST00000509638 TTYH3Q9C0H2 523 aa31.48■■■□□ 2.63
LIMCH1-211ENST00000509638 PAEPP09466 180 aa31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 CD19P15391 556 aa31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 ELF1P32519 619 aa31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 DUSP4Q13115 394 aa31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 CFAP221Q4G0U5 840 aa31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 PPM1EQ8WY54 764 aa31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 CASP10Q92851 521 aa31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 B3GNT5Q9BYG0 378 aa31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 PLEKHA4Q9H4M7 779 aa31.47■■■□□ 2.63
LIMCH1-211ENST00000509638 ABCB6Q9NP58 842 aa31.47■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms