RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 GADL1Q6ZQY3 521 aa10.39□□□□□ -0.75
CLIP1-204ENST00000501271 CAPN12Q6ZSI9 719 aa10.39□□□□□ -0.75
CLIP1-204ENST00000501271 TSHZ1Q6ZSZ6 1077 aa10.39□□□□□ -0.75
CLIP1-204ENST00000501271 NKD2Q969F2 451 aaPredicted RBP10.39□□□□□ -0.75
CLIP1-204ENST00000501271 NLRP4Q96MN2 994 aa10.39□□□□□ -0.75
CLIP1-204ENST00000501271 TGS1Q96RS0 853 aaKnown RBP10.39□□□□□ -0.75
CLIP1-204ENST00000501271 CCDC77Q9BR77 488 aa10.39□□□□□ -0.75
CLIP1-204ENST00000501271 C10orf88Q9H8K7 445 aa10.39□□□□□ -0.75
CLIP1-204ENST00000501271 DDX56Q9NY93 547 aaKnown RBP10.39□□□□□ -0.75
CLIP1-204ENST00000501271 SAE1Q9UBE0 346 aaPredicted RBP10.39□□□□□ -0.75
CLIP1-204ENST00000501271 DRG1Q9Y295 367 aaKnown RBP10.39□□□□□ -0.75
CLIP1-204ENST00000501271 CEP83Q9Y592 693 aa10.39□□□□□ -0.75
CLIP1-204ENST00000501271 SGK1O00141 431 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 NOP56O00567 594 aaKnown RBP10.38□□□□□ -0.75
CLIP1-204ENST00000501271 LRCH4O75427 683 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 BANF1O75531 89 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 CNMDO75829 334 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 IFNB1P01574 187 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 ITGAVP06756 1048 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 CXCL8P10145 99 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 CD19P15391 556 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 PSMA2P25787 234 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 GTF2A1P52655 376 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-204ENST00000501271 DYNLT1P63172 113 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 LACTBP83111 547 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-204ENST00000501271 MORF4L2Q15014 288 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 SURF1Q15526 300 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 KCNT1Q5JUK3 1230 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 ATF7IP2Q5U623 682 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 PARP9Q8IXQ6 854 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 KIAA0319LQ8IZA0 1049 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 RIBC1Q8N443 379 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-204ENST00000501271 SLC35B2Q8TB61 432 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 CFAP57Q96MR6 1250 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 MINDY3Q9H8M7 445 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 ZWILCHQ9H900 591 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 SIX4Q9UIU6 781 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 AGAP1Q9UPQ3 857 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 PPME1Q9Y570 386 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 ACTL7BQ9Y614 415 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 ZSWIM8A7E2V4 1837 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 INO80B-WBP1J3KQ70 363 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 ACKR2O00590 384 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 GAS2O43903 313 aaKnown RBP10.38□□□□□ -0.75
CLIP1-204ENST00000501271 B4GALT4O60513 344 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 UBOX5O94941 541 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 TNNC2P02585 160 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 KRT19P08727 400 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 IQCF3P0C7M6 154 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 FOXN2P32314 431 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 GDF10P55107 478 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 CDH8P55286 799 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 WDR4P57081 412 aaKnown RBP10.38□□□□□ -0.75
CLIP1-204ENST00000501271 GAD2Q05329 585 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 CELF3Q5SZQ8 465 aaKnown RBP10.38□□□□□ -0.75
CLIP1-204ENST00000501271 ARHGEF18Q6ZSZ5 1173 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 CEP128Q6ZU80 1094 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 SPATA21Q7Z572 469 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 POLNQ7Z5Q5 900 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 TRABD2AQ86V40 505 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 FAM228AQ86W67 206 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 FBXO16Q8IX29 292 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-204ENST00000501271 ZBED8Q8IZ13 594 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 PRCCQ92733 491 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-204ENST00000501271 COPS5Q92905 334 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 ANKRD36BP1Q96IX9 119 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 MAGEB18Q96M61 343 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 CPXM1Q96SM3 734 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 INO80BQ9C086 356 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-204ENST00000501271 SDCBP2Q9H190 292 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 C2orf40Q9H1Z8 148 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 CDT1Q9H211 546 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 FZD8Q9H461 694 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 KIF9Q9HAQ2 790 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 PCDH9Q9HC56 1237 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 NKIRAS1Q9NYS0 192 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 HMGXB4Q9UGU5 601 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 STRIP2Q9ULQ0 834 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 DICER1Q9UPY3 1922 aaKnown RBP10.38□□□□□ -0.75
CLIP1-204ENST00000501271 PCNTO95613 3336 aa10.38□□□□□ -0.75
CLIP1-204ENST00000501271 POC1B-GALNT4F8VUJ3 575 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 GOLGA8MH3BSY2 632 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 IRF6O14896 467 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 SPAG7O75391 227 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 SUN1O94901 812 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 NFICP08651 508 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 CD48P09326 243 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 KRT3P12035 628 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 CLCN3P51790 818 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 RAD23BP54727 409 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 OTUD4Q01804 1114 aaKnown RBP10.37□□□□□ -0.75
CLIP1-204ENST00000501271 PLCB3Q01970 1234 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 MBTD1Q05BQ5 628 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 SWT1Q5T5J6 900 aaKnown RBP10.37□□□□□ -0.75
CLIP1-204ENST00000501271 PLPPR4Q7Z2D5 763 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 EMC1Q8N766 993 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 ACTL9Q8TC94 416 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 TTC25Q96NG3 672 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 TWNKQ96RR1 684 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 TXNRD2Q9NNW7 524 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms