RNA–Protein interactions for RNA: ENST00000498534.5

CNOT4-211, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 2

Gene CNOT4, Length 481 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-211ENST00000498534 PRAMEF12O95522 483 aa12.96□□□□□ -0.33
CNOT4-211ENST00000498534 LDHAP00338 332 aaKnown RBP12.96□□□□□ -0.33
CNOT4-211ENST00000498534 DDX6P26196 483 aaKnown RBP eCLIP12.96□□□□□ -0.33
CNOT4-211ENST00000498534 TFAMQ00059 246 aaKnown RBP12.96□□□□□ -0.33
CNOT4-211ENST00000498534 GRSF1Q12849 480 aaKnown RBP eCLIP12.96□□□□□ -0.33
CNOT4-211ENST00000498534 CCINQ13939 588 aa12.96□□□□□ -0.33
CNOT4-211ENST00000498534 CC2D1AQ6P1N0 951 aaPredicted RBP12.96□□□□□ -0.33
CNOT4-211ENST00000498534 CRELD2Q6UXH1 353 aaPredicted RBP12.96□□□□□ -0.33
CNOT4-211ENST00000498534 Q6ZS52 159 aa12.96□□□□□ -0.33
CNOT4-211ENST00000498534 SFR1Q86XK3 245 aa12.96□□□□□ -0.33
CNOT4-211ENST00000498534 SYCP3Q8IZU3 236 aa12.96□□□□□ -0.33
CNOT4-211ENST00000498534 MAB21L3Q8N8X9 362 aa12.96□□□□□ -0.33
CNOT4-211ENST00000498534 MRPS31Q92665 395 aaKnown RBP12.96□□□□□ -0.33
CNOT4-211ENST00000498534 EXOC4Q96A65 974 aa12.96□□□□□ -0.33
CNOT4-211ENST00000498534 FAM213AQ9BRX8 229 aa12.96□□□□□ -0.33
CNOT4-211ENST00000498534 SMG9Q9H0W8 520 aaKnown RBP12.96□□□□□ -0.33
CNOT4-211ENST00000498534 IL21Q9HBE4 155 aa12.96□□□□□ -0.33
CNOT4-211ENST00000498534 TDP1Q9NUW8 608 aa12.96□□□□□ -0.33
CNOT4-211ENST00000498534 R3HCC1Q9Y3T6 440 aaKnown RBP12.96□□□□□ -0.33
CNOT4-211ENST00000498534 SCN1AP35498 2009 aa12.96□□□□□ -0.34
CNOT4-211ENST00000498534 COL4A2P08572 1712 aa12.96□□□□□ -0.34
CNOT4-211ENST00000498534 VPS37CA5D8V6 355 aaPredicted RBP12.95□□□□□ -0.34
CNOT4-211ENST00000498534 F11P03951 625 aa12.95□□□□□ -0.34
CNOT4-211ENST00000498534 CSH1P0DML2 217 aa12.95□□□□□ -0.34
CNOT4-211ENST00000498534 CSH2P0DML3 217 aa12.95□□□□□ -0.34
CNOT4-211ENST00000498534 ADSSP30520 456 aa12.95□□□□□ -0.34
CNOT4-211ENST00000498534 NLRP12P59046 1061 aa12.95□□□□□ -0.34
CNOT4-211ENST00000498534 RPL10AP62906 217 aaKnown RBP12.95□□□□□ -0.34
CNOT4-211ENST00000498534 MYL7Q01449 175 aa12.95□□□□□ -0.34
CNOT4-211ENST00000498534 DMWDQ09019 674 aa12.95□□□□□ -0.34
CNOT4-211ENST00000498534 RUNX3Q13761 415 aa12.95□□□□□ -0.34
CNOT4-211ENST00000498534 CSRP2Q16527 193 aa12.95□□□□□ -0.34
CNOT4-211ENST00000498534 USP49Q70CQ1 688 aa12.95□□□□□ -0.34
CNOT4-211ENST00000498534 EFCAB13Q8IY85 973 aa12.95□□□□□ -0.34
CNOT4-211ENST00000498534 NETO1Q8TDF5 533 aa12.95□□□□□ -0.34
CNOT4-211ENST00000498534 FAM83CQ9BQN1 747 aa12.95□□□□□ -0.34
CNOT4-211ENST00000498534 ACBD6Q9BR61 282 aa12.95□□□□□ -0.34
CNOT4-211ENST00000498534 PI4K2AQ9BTU6 479 aa12.95□□□□□ -0.34
CNOT4-211ENST00000498534 SEMA4GQ9NTN9 838 aa12.95□□□□□ -0.34
CNOT4-211ENST00000498534 UXTQ9UBK9 157 aaPredicted RBP12.95□□□□□ -0.34
CNOT4-211ENST00000498534 MAGED2Q9UNF1 606 aaPredicted RBP12.95□□□□□ -0.34
CNOT4-211ENST00000498534 AGAP1Q9UPQ3 857 aa12.95□□□□□ -0.34
CNOT4-211ENST00000498534 SRPRBQ9Y5M8 271 aaKnown RBP12.95□□□□□ -0.34
CNOT4-211ENST00000498534 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.95□□□□□ -0.34
CNOT4-211ENST00000498534 ANK1P16157 1881 aa12.95□□□□□ -0.34
CNOT4-211ENST00000498534 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.94□□□□□ -0.34
CNOT4-211ENST00000498534 GCNT3O95395 438 aa12.94□□□□□ -0.34
CNOT4-211ENST00000498534 ITGB3P05106 788 aa12.94□□□□□ -0.34
CNOT4-211ENST00000498534 HMGA1P17096 107 aaKnown RBP12.94□□□□□ -0.34
CNOT4-211ENST00000498534 POLR2BP30876 1174 aaKnown RBP12.94□□□□□ -0.34
CNOT4-211ENST00000498534 SRSF5Q13243 272 aaKnown RBP12.94□□□□□ -0.34
CNOT4-211ENST00000498534 ALCAMQ13740 583 aa12.94□□□□□ -0.34
CNOT4-211ENST00000498534 L1TD1Q5T7N2 865 aaKnown RBP12.94□□□□□ -0.34
CNOT4-211ENST00000498534 MON1AQ86VX9 555 aa12.94□□□□□ -0.34
CNOT4-211ENST00000498534 WDR5BQ86VZ2 330 aa12.94□□□□□ -0.34
CNOT4-211ENST00000498534 TMEM86AQ8N2M4 240 aa12.94□□□□□ -0.34
CNOT4-211ENST00000498534 PDCL2Q8N4E4 241 aa12.94□□□□□ -0.34
CNOT4-211ENST00000498534 CSGALNACT2Q8N6G5 542 aa12.94□□□□□ -0.34
CNOT4-211ENST00000498534 STRA6Q9BX79 667 aa12.94□□□□□ -0.34
CNOT4-211ENST00000498534 IKZF4Q9H2S9 585 aa12.94□□□□□ -0.34
CNOT4-211ENST00000498534 KIF9Q9HAQ2 790 aa12.94□□□□□ -0.34
CNOT4-211ENST00000498534 ABCB6Q9NP58 842 aa12.94□□□□□ -0.34
CNOT4-211ENST00000498534 DDX43Q9NXZ2 648 aaKnown RBP12.94□□□□□ -0.34
CNOT4-211ENST00000498534 TBC1D7Q9P0N9 293 aa12.94□□□□□ -0.34
CNOT4-211ENST00000498534 SLC8A2Q9UPR5 921 aa12.94□□□□□ -0.34
CNOT4-211ENST00000498534 CLIC4Q9Y696 253 aa12.94□□□□□ -0.34
CNOT4-211ENST00000498534 RALGAPA1Q6GYQ0 2036 aa12.94□□□□□ -0.34
CNOT4-211ENST00000498534 TPRP12270 2363 aaKnown RBP12.94□□□□□ -0.34
CNOT4-211ENST00000498534 TCHHQ07283 1943 aa12.94□□□□□ -0.34
CNOT4-211ENST00000498534 NUP210Q8TEM1 1887 aaPredicted RBP12.93□□□□□ -0.34
CNOT4-211ENST00000498534 CCDC163A0A0D9SF12 145 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 MYMKA6NI61 221 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 TRDMT1O14717 391 aaKnown RBP12.93□□□□□ -0.34
CNOT4-211ENST00000498534 SLC30A4O14863 429 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 PPP1R37O75864 691 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 KRT19P08727 400 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 IDEP14735 1019 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 GARTP22102 1010 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 LHX1P48742 406 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 RBP5P82980 135 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 KCNA1Q09470 495 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 PDGFRLQ15198 375 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 DDR2Q16832 855 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 TMEM196Q5HYL7 178 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 WDR44Q5JSH3 913 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 TXNDC8Q6A555 127 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 CCDC73Q6ZRK6 1079 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 PRR23CQ6ZRP0 262 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 TMEM150AQ86TG1 271 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 BRSK2Q8IWQ3 736 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 FAM160A2Q8N612 972 aaPredicted RBP12.93□□□□□ -0.34
CNOT4-211ENST00000498534 EFCAB3Q8N7B9 438 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 LRRC52Q8N7C0 313 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 PDCD7Q8N8D1 485 aaKnown RBP12.93□□□□□ -0.34
CNOT4-211ENST00000498534 NOC3LQ8WTT2 800 aaKnown RBP12.93□□□□□ -0.34
CNOT4-211ENST00000498534 USP13Q92995 863 aaPredicted RBP12.93□□□□□ -0.34
CNOT4-211ENST00000498534 DNAJC19Q96DA6 116 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 SAAL1Q96ER3 474 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 EBF3Q9H4W6 596 aa12.93□□□□□ -0.34
CNOT4-211ENST00000498534 TMEM206Q9H813 350 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms