RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 EEF2KMTQ96G04 330 aa17.5■□□□□ 0.39
SF3A1-209ENST00000496189 FUBP3Q96I24 572 aaKnown RBP eCLIP17.5■□□□□ 0.39
SF3A1-209ENST00000496189 TNIP3Q96KP6 325 aa17.5■□□□□ 0.39
SF3A1-209ENST00000496189 MYADMQ96S97 322 aa17.5■□□□□ 0.39
SF3A1-209ENST00000496189 GDE1Q9NZC3 331 aa17.5■□□□□ 0.39
SF3A1-209ENST00000496189 MAGEC2Q9UBF1 373 aaPredicted RBP17.5■□□□□ 0.39
SF3A1-209ENST00000496189 RWDD2AQ9UIY3 292 aa17.5■□□□□ 0.39
SF3A1-209ENST00000496189 GTF3C4Q9UKN8 822 aa17.5■□□□□ 0.39
SF3A1-209ENST00000496189 MICAL2O94851 1124 aa17.49■□□□□ 0.39
SF3A1-209ENST00000496189 LETM1O95202 739 aaPredicted RBP17.49■□□□□ 0.39
SF3A1-209ENST00000496189 GNA14O95837 355 aa17.49■□□□□ 0.39
SF3A1-209ENST00000496189 ASGR2P07307 311 aa17.49■□□□□ 0.39
SF3A1-209ENST00000496189 HAPLN1P10915 354 aaPredicted RBP17.49■□□□□ 0.39
SF3A1-209ENST00000496189 PMS1P54277 932 aaKnown RBP17.49■□□□□ 0.39
SF3A1-209ENST00000496189 TDGQ13569 410 aa17.49■□□□□ 0.39
SF3A1-209ENST00000496189 ARHGAP15Q53QZ3 475 aa17.49■□□□□ 0.39
SF3A1-209ENST00000496189 WDR44Q5JSH3 913 aa17.49■□□□□ 0.39
SF3A1-209ENST00000496189 TTI2Q6NXR4 508 aa17.49■□□□□ 0.39
SF3A1-209ENST00000496189 CAVIN1Q6NZI2 390 aaKnown RBP17.49■□□□□ 0.39
SF3A1-209ENST00000496189 SCARA5Q6ZMJ2 495 aa17.49■□□□□ 0.39
SF3A1-209ENST00000496189 LIMS2Q7Z4I7 341 aa17.49■□□□□ 0.39
SF3A1-209ENST00000496189 LRRTM3Q86VH5 581 aa17.49■□□□□ 0.39
SF3A1-209ENST00000496189 OSTM1Q86WC4 334 aa17.49■□□□□ 0.39
SF3A1-209ENST00000496189 ZC3H3Q8IXZ2 948 aaKnown RBP17.49■□□□□ 0.39
SF3A1-209ENST00000496189 KBTBD7Q8WVZ9 684 aa17.49■□□□□ 0.39
SF3A1-209ENST00000496189 ING5Q8WYH8 240 aa17.49■□□□□ 0.39
SF3A1-209ENST00000496189 KHSRPQ92945 711 aaKnown RBP eCLIP17.49■□□□□ 0.39
SF3A1-209ENST00000496189 PSMG2Q969U7 264 aa17.49■□□□□ 0.39
SF3A1-209ENST00000496189 PI4K2AQ9BTU6 479 aa17.49■□□□□ 0.39
SF3A1-209ENST00000496189 GPR88Q9GZN0 384 aa17.49■□□□□ 0.39
SF3A1-209ENST00000496189 XYLT2Q9H1B5 865 aa17.49■□□□□ 0.39
SF3A1-209ENST00000496189 SLITRK6Q9H5Y7 841 aa17.49■□□□□ 0.39
SF3A1-209ENST00000496189 KCNK12Q9HB15 430 aa17.49■□□□□ 0.39
SF3A1-209ENST00000496189 CEP72Q9P209 647 aa17.49■□□□□ 0.39
SF3A1-209ENST00000496189 ATP8B3O60423 1300 aa17.48■□□□□ 0.39
SF3A1-209ENST00000496189 N4BP1O75113 896 aaKnown RBP17.48■□□□□ 0.39
SF3A1-209ENST00000496189 VNN1O95497 513 aa17.48■□□□□ 0.39
SF3A1-209ENST00000496189 VNN2O95498 520 aa17.48■□□□□ 0.39
SF3A1-209ENST00000496189 ANXA13P27216 316 aa17.48■□□□□ 0.39
SF3A1-209ENST00000496189 ERCC5P28715 1186 aaPredicted RBP17.48■□□□□ 0.39
SF3A1-209ENST00000496189 STX17P56962 302 aa17.48■□□□□ 0.39
SF3A1-209ENST00000496189 PSMC1P62191 440 aaKnown RBP17.48■□□□□ 0.39
SF3A1-209ENST00000496189 CYP27A1Q02318 531 aa17.48■□□□□ 0.39
SF3A1-209ENST00000496189 SIGLEC14Q08ET2 396 aa17.48■□□□□ 0.39
SF3A1-209ENST00000496189 CETN1Q12798 172 aa17.48■□□□□ 0.39
SF3A1-209ENST00000496189 TPD52L1Q16890 204 aaPredicted RBP17.48■□□□□ 0.39
SF3A1-209ENST00000496189 CFAP221Q4G0U5 840 aa17.48■□□□□ 0.39
SF3A1-209ENST00000496189 SCARA3Q6AZY7 606 aa17.48■□□□□ 0.39
SF3A1-209ENST00000496189 FRMD5Q7Z6J6 570 aa17.48■□□□□ 0.39
SF3A1-209ENST00000496189 FILIP1Q7Z7B0 1213 aa17.48■□□□□ 0.39
SF3A1-209ENST00000496189 FBXL13Q8NEE6 735 aa17.48■□□□□ 0.39
SF3A1-209ENST00000496189 ITFG1Q8TB96 612 aa17.48■□□□□ 0.39
SF3A1-209ENST00000496189 CRISPLD1Q9H336 500 aa17.48■□□□□ 0.39
SF3A1-209ENST00000496189 ANO10Q9NW15 660 aa17.48■□□□□ 0.39
SF3A1-209ENST00000496189 GPR37L1O60883 481 aa17.47■□□□□ 0.39
SF3A1-209ENST00000496189 SOAT2O75908 522 aa17.47■□□□□ 0.39
SF3A1-209ENST00000496189 ASS1P00966 412 aaKnown RBP17.47■□□□□ 0.39
SF3A1-209ENST00000496189 CSH1P0DML2 217 aa17.47■□□□□ 0.39
SF3A1-209ENST00000496189 CSH2P0DML3 217 aa17.47■□□□□ 0.39
SF3A1-209ENST00000496189 LMO2P25791 158 aa17.47■□□□□ 0.39
SF3A1-209ENST00000496189 CDC25CP30307 473 aa17.47■□□□□ 0.39
SF3A1-209ENST00000496189 NOP14P78316 857 aaKnown RBP17.47■□□□□ 0.39
SF3A1-209ENST00000496189 PPP3CAQ08209 521 aa17.47■□□□□ 0.39
SF3A1-209ENST00000496189 DPCR1Q3MIW9 517 aa17.47■□□□□ 0.39
SF3A1-209ENST00000496189 VSTM1Q6UX27 236 aa17.47■□□□□ 0.39
SF3A1-209ENST00000496189 TRIM67Q6ZTA4 783 aa17.47■□□□□ 0.39
SF3A1-209ENST00000496189 DNAJB7Q7Z6W7 309 aaPredicted RBP17.47■□□□□ 0.39
SF3A1-209ENST00000496189 SCN4BQ8IWT1 228 aa17.47■□□□□ 0.39
SF3A1-209ENST00000496189 NPAS3Q8IXF0 933 aa17.47■□□□□ 0.39
SF3A1-209ENST00000496189 TTC9BQ8N6N2 239 aa17.47■□□□□ 0.39
SF3A1-209ENST00000496189 MCRS1Q96EZ8 462 aa17.47■□□□□ 0.39
SF3A1-209ENST00000496189 DUSP9Q99956 384 aaKnown RBP17.47■□□□□ 0.39
SF3A1-209ENST00000496189 MRPL45Q9BRJ2 306 aaKnown RBP17.47■□□□□ 0.39
SF3A1-209ENST00000496189 SMYD3Q9H7B4 428 aa17.47■□□□□ 0.39
SF3A1-209ENST00000496189 EHD2Q9NZN4 543 aa17.47■□□□□ 0.39
SF3A1-209ENST00000496189 TMEM63CQ9P1W3 806 aa17.47■□□□□ 0.39
SF3A1-209ENST00000496189 UXTQ9UBK9 157 aaPredicted RBP17.47■□□□□ 0.39
SF3A1-209ENST00000496189 PRR33A8MZF0 331 aa17.46■□□□□ 0.39
SF3A1-209ENST00000496189 CCDC192P0DO97 292 aa17.46■□□□□ 0.39
SF3A1-209ENST00000496189 CEBPBP17676 345 aa17.46■□□□□ 0.39
SF3A1-209ENST00000496189 PTPN1P18031 435 aaKnown RBP17.46■□□□□ 0.39
SF3A1-209ENST00000496189 MAGEA11P43364 429 aa17.46■□□□□ 0.39
SF3A1-209ENST00000496189 CDR1P51861 262 aa17.46■□□□□ 0.39
SF3A1-209ENST00000496189 EPHA5P54756 1037 aa17.46■□□□□ 0.39
SF3A1-209ENST00000496189 STX1AQ16623 288 aa17.46■□□□□ 0.39
SF3A1-209ENST00000496189 SLC5A9Q2M3M2 681 aa17.46■□□□□ 0.39
SF3A1-209ENST00000496189 MDH1BQ5I0G3 518 aa17.46■□□□□ 0.39
SF3A1-209ENST00000496189 C1orf220Q5T0J3 134 aa17.46■□□□□ 0.39
SF3A1-209ENST00000496189 FAM171BQ6P995 826 aa17.46■□□□□ 0.39
SF3A1-209ENST00000496189 HS6ST3Q8IZP7 471 aa17.46■□□□□ 0.39
SF3A1-209ENST00000496189 TTC39CQ8N584 583 aa17.46■□□□□ 0.39
SF3A1-209ENST00000496189 MYCBPAPQ8TBZ2 947 aa17.46■□□□□ 0.39
SF3A1-209ENST00000496189 TAS1R2Q8TE23 839 aa17.46■□□□□ 0.39
SF3A1-209ENST00000496189 GIPC2Q8TF65 315 aa17.46■□□□□ 0.39
SF3A1-209ENST00000496189 MYLPFQ96A32 169 aa17.46■□□□□ 0.39
SF3A1-209ENST00000496189 LPIN3Q9BQK8 851 aa17.46■□□□□ 0.39
SF3A1-209ENST00000496189 SRRTQ9BXP5 876 aaKnown RBP17.46■□□□□ 0.39
SF3A1-209ENST00000496189 NIF3L1Q9GZT8 377 aa17.46■□□□□ 0.39
SF3A1-209ENST00000496189 TMLHEQ9NVH6 421 aa17.46■□□□□ 0.39
SF3A1-209ENST00000496189 FBXL21Q9UKT6 434 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms