RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	MRFAP1	Q9Y605	127 aa		4.92	□□□□□ -1.62
VPS52-222	ENST00000495981	IGF2R	P11717	2491 aa		4.92	□□□□□ -1.62
VPS52-222	ENST00000495981	HELZ2	Q9BYK8	2649 aa	Known RBP	4.92	□□□□□ -1.62
VPS52-222	ENST00000495981	MYH6	P13533	1939 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	KIAA1671	Q9BY89	1806 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	KIF28P	B7ZC32	967 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	NFIB	O00712	420 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	RNF113A	O15541	343 aa	Known RBP	4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	NMT2	O60551	498 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	PLA2G6	O60733	806 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	GJB5	O95377	273 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	ZFY	P08048	801 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	TMEM253	P0C7T8	217 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	MYB	P10242	640 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	AGXT	P21549	392 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	EDNRB	P24530	442 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	AKAP5	P24588	427 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	FPR2	P25090	351 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	COL8A1	P27658	744 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	OXCT1	P55809	520 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	PCBP3	P57721	371 aa	Known RBP	4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	RPL11	P62913	178 aa	Known RBP	4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	RBM10	P98175	930 aa	Known RBP	4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	SRSF2	Q01130	221 aa	Known RBP	4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	PPARA	Q07869	468 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	SIGLEC14	Q08ET2	396 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	LAPTM5	Q13571	262 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	PUM1	Q14671	1186 aa	Known RBP eCLIP	4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	FSCN1	Q16658	493 aa	Known RBP	4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	TMEM95	Q3KNT9	176 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	PRRT3	Q5FWE3	981 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	ZMYM1	Q5SVZ6	1142 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	IFIT1B	Q5T764	474 aa	Known RBP	4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	VPS53	Q5VIR6	699 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	CPZ	Q66K79	652 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	ZSCAN25	Q6NSZ9	544 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	TAPT1	Q6NXT6	567 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	LILRA6	Q6PI73	481 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	PAOX	Q6QHF9	649 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	BEND4	Q6ZU67	534 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	KCNK18	Q7Z418	384 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	CATIP	Q7Z7H3	387 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	ZAR1	Q86SH2	424 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	SPACA3	Q8IXA5	215 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	PCSK9	Q8NBP7	692 aa	Known RBP	4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	ZBTB34	Q8NCN2	500 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	PARD3B	Q8TEW8	1205 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	HPS3	Q969F9	1004 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	TTC17	Q96AE7	1141 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	DDX11	Q96FC9	970 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	SEC62	Q99442	399 aa	Known RBP	4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	RAD9A	Q99638	391 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	ACO2	Q99798	780 aa	Known RBP	4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	FTO	Q9C0B1	505 aa	Known RBP eCLIP	4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	RANBP17	Q9H2T7	1088 aa	Known RBP	4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	SEMA4A	Q9H3S1	761 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	SMOC1	Q9H4F8	434 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	PPCS	Q9HAB8	311 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	PDGFC	Q9NRA1	345 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	IL17RB	Q9NRM6	502 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	FNIP2	Q9P278	1114 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	FBLN5	Q9UBX5	448 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	CLIP2	Q9UDT6	1046 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	GTF2IRD1	Q9UHL9	959 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	ADGRE2	Q9UHX3	823 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	MKL2	Q9ULH7	1088 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	NOC2L	Q9Y3T9	749 aa	Known RBP	4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	RALGAPA2	Q2PPJ7	1873 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	NLRC5	Q86WI3	1866 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	ZMYM6	O95789	1325 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	TTC41P	Q6P2S7	1318 aa		4.91	□□□□□ -1.62
VPS52-222	ENST00000495981	WDFY3	Q8IZQ1	3526 aa		4.9	□□□□□ -1.62
VPS52-222	ENST00000495981	FAM170B	A6NMN3	283 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	TMEM232	C9JQI7	657 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981		H7BY64	318 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	TPP1	O14773	563 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	PI15	O43692	258 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	ORC4	O43929	436 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	NBN	O60934	754 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	CSPG5	O95196	566 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	ICAM1	P05362	532 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	POU2F2	P09086	479 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	LINC00271	P0C7V0	271 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	SPATA31C1	P0DKV0	1188 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	GNAT2	P19087	354 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	TRAPPC10	P48553	1259 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	ALDH5A1	P51649	535 aa	Predicted RBP	4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	KIF11	P52732	1056 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	ATXN1	P54253	815 aa	Known RBP	4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	SNAP25	P60880	206 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	TEK	Q02763	1124 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	TNFAIP2	Q03169	654 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	ACAP2	Q15057	778 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	RSPO4	Q2I0M5	234 aa	Predicted RBP	4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	EPC2	Q52LR7	807 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	SLFN13	Q68D06	897 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	XRRA1	Q6P2D8	792 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	RNF111	Q6ZNA4	994 aa		4.9	□□□□□ -1.63
VPS52-222	ENST00000495981	FRMD7	Q6ZUT3	714 aa		4.9	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms