RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 FBXO43Q4G163 708 aa9.83□□□□□ -0.84
HDAC3-212ENST00000492407 STXBP5Q5T5C0 1151 aa9.83□□□□□ -0.84
HDAC3-212ENST00000492407 RRAGBQ5VZM2 374 aa9.83□□□□□ -0.84
HDAC3-212ENST00000492407 WSCD1Q658N2 575 aa9.83□□□□□ -0.84
HDAC3-212ENST00000492407 TXNDC11Q6PKC3 985 aa9.83□□□□□ -0.84
HDAC3-212ENST00000492407 CCDC73Q6ZRK6 1079 aa9.83□□□□□ -0.84
HDAC3-212ENST00000492407 DPH6Q7L8W6 267 aa9.83□□□□□ -0.84
HDAC3-212ENST00000492407 LRRTM3Q86VH5 581 aa9.83□□□□□ -0.84
HDAC3-212ENST00000492407 MON1AQ86VX9 555 aa9.83□□□□□ -0.84
HDAC3-212ENST00000492407 BRSK2Q8IWQ3 736 aa9.83□□□□□ -0.84
HDAC3-212ENST00000492407 TOP6BLQ8N6T0 577 aa9.83□□□□□ -0.84
HDAC3-212ENST00000492407 DDX1Q92499 740 aaKnown RBP9.83□□□□□ -0.84
HDAC3-212ENST00000492407 DNAJC19Q96DA6 116 aa9.83□□□□□ -0.84
HDAC3-212ENST00000492407 TRMT2BQ96GJ1 504 aaKnown RBP9.83□□□□□ -0.84
HDAC3-212ENST00000492407 FUBP3Q96I24 572 aaKnown RBP eCLIP9.83□□□□□ -0.84
HDAC3-212ENST00000492407 EPSTI1Q96J88 318 aa9.83□□□□□ -0.84
HDAC3-212ENST00000492407 LRRC27Q9C0I9 530 aa9.83□□□□□ -0.84
HDAC3-212ENST00000492407 MRPL44Q9H9J2 332 aaKnown RBP9.83□□□□□ -0.84
HDAC3-212ENST00000492407 TDP1Q9NUW8 608 aa9.83□□□□□ -0.84
HDAC3-212ENST00000492407 GTSE1Q9NYZ3 720 aa9.83□□□□□ -0.84
HDAC3-212ENST00000492407 ITGA11Q9UKX5 1188 aa9.83□□□□□ -0.84
HDAC3-212ENST00000492407 USP18Q9UMW8 372 aa9.83□□□□□ -0.84
HDAC3-212ENST00000492407 COL4A3Q01955 1670 aa9.83□□□□□ -0.84
HDAC3-212ENST00000492407 PDCD11Q14690 1871 aaKnown RBP9.83□□□□□ -0.84
HDAC3-212ENST00000492407 GPR179Q6PRD1 2367 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 F5P12259 2224 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 DNAH14Q0VDD8 3507 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 FRMD3A2A2Y4 597 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 SLC30A4O14863 429 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 EXTL3O43909 919 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 CD2BP2O95400 341 aaKnown RBP9.82□□□□□ -0.84
HDAC3-212ENST00000492407 PRAMEF12O95522 483 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 TCF3P15923 654 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 DRD1P21728 446 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 PDE6CP51160 858 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 NLRP12P59046 1061 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 RBP5P82980 135 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 MYL7Q01449 175 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 GRIN1Q05586 938 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 GRSF1Q12849 480 aaKnown RBP eCLIP9.82□□□□□ -0.84
HDAC3-212ENST00000492407 RUNX3Q13761 415 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 SURF1Q15526 300 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 CFAP221Q4G0U5 840 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 TMEM196Q5HYL7 178 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 STXBP4Q6ZWJ1 553 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 TMEM150AQ86TG1 271 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 SFR1Q86XK3 245 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 EFCAB13Q8IY85 973 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 CAMKK1Q8N5S9 505 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 TTC9BQ8N6N2 239 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 MRPS31Q92665 395 aaKnown RBP9.82□□□□□ -0.84
HDAC3-212ENST00000492407 LPIN3Q9BQK8 851 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 FAM213AQ9BRX8 229 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 PARD6AQ9NPB6 346 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 GKN1Q9NS71 199 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 SEMA4GQ9NTN9 838 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 EHD2Q9NZN4 543 aa9.82□□□□□ -0.84
HDAC3-212ENST00000492407 FBXO2Q9UK22 296 aaPredicted RBP9.82□□□□□ -0.84
HDAC3-212ENST00000492407 MYMKA6NI61 221 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 GABRDO14764 452 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 PRPF40AO75400 957 aaKnown RBP9.81□□□□□ -0.84
HDAC3-212ENST00000492407 SOAT2O75908 522 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 NOL4O94818 638 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 PCSK1P29120 753 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 MAGEA11P43364 429 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 SOX9P48436 509 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 FNTBP49356 437 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 LIMK1P53667 647 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 CYP4F8P98187 520 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 BFSP1Q12934 665 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 MYO1EQ12965 1108 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 SLC39A14Q15043 492 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 PON2Q15165 354 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 MAPRE1Q15691 268 aaKnown RBP9.81□□□□□ -0.84
HDAC3-212ENST00000492407 INTS6LQ5JSJ4 861 aaKnown RBP9.81□□□□□ -0.84
HDAC3-212ENST00000492407 CC2D1AQ6P1N0 951 aaPredicted RBP9.81□□□□□ -0.84
HDAC3-212ENST00000492407 PRR23BQ6ZRT6 265 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 USP49Q70CQ1 688 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 DYMQ7RTS9 669 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 LIMS2Q7Z4I7 341 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.81□□□□□ -0.84
HDAC3-212ENST00000492407 TMEM130Q8N3G9 435 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 PDCL2Q8N4E4 241 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 C1orf127Q8N9H9 656 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 CXorf38Q8TB03 319 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 GIPC2Q8TF65 315 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 USP13Q92995 863 aaPredicted RBP9.81□□□□□ -0.84
HDAC3-212ENST00000492407 INTS4Q96HW7 963 aaKnown RBP9.81□□□□□ -0.84
HDAC3-212ENST00000492407 PKMYT1Q99640 499 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 ZSCAN16Q9H4T2 348 aaPredicted RBP9.81□□□□□ -0.84
HDAC3-212ENST00000492407 KIAA1586Q9HCI6 787 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 RBM12Q9NTZ6 932 aaKnown RBP9.81□□□□□ -0.84
HDAC3-212ENST00000492407 ABI2Q9NYB9 513 aaPredicted RBP9.81□□□□□ -0.84
HDAC3-212ENST00000492407 RBAKQ9NYW8 714 aaPredicted RBP9.81□□□□□ -0.84
HDAC3-212ENST00000492407 AGAP1Q9UPQ3 857 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 R3HCC1Q9Y3T6 440 aaKnown RBP9.81□□□□□ -0.84
HDAC3-212ENST00000492407 CLIC4Q9Y696 253 aa9.81□□□□□ -0.84
HDAC3-212ENST00000492407 CEP250Q9BV73 2442 aa9.8□□□□□ -0.84
HDAC3-212ENST00000492407 TISP43B9A030 160 aa9.8□□□□□ -0.84
HDAC3-212ENST00000492407 GCNT3O95395 438 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms