RNA–Protein interactions for RNA: ENST00000492275.5

TTC3-223, Transcript of tetratricopeptide repeat domain 3, human

TSL 3

Gene TTC3, Length 769 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-223	ENST00000492275	DPEP3	Q9H4B8	488 aa		27.57	■■■□□ 2
TTC3-223	ENST00000492275	UST	Q9Y2C2	406 aa		27.57	■■■□□ 2
TTC3-223	ENST00000492275		A8MXQ7	604 aa		27.56	■■■□□ 2
TTC3-223	ENST00000492275	DLL1	O00548	723 aa		27.56	■■■□□ 2
TTC3-223	ENST00000492275	PMM2	O15305	246 aa		27.56	■■■□□ 2
TTC3-223	ENST00000492275	N4BP1	O75113	896 aa	Known RBP	27.56	■■■□□ 2
TTC3-223	ENST00000492275	CCDC192	P0DO97	292 aa		27.56	■■■□□ 2
TTC3-223	ENST00000492275	PTPN2	P17706	415 aa		27.56	■■■□□ 2
TTC3-223	ENST00000492275	TUFM	P49411	452 aa	Known RBP	27.56	■■■□□ 2
TTC3-223	ENST00000492275	SEPT5	Q99719	369 aa	Predicted RBP	27.56	■■■□□ 2
TTC3-223	ENST00000492275	NR2E1	Q9Y466	385 aa		27.56	■■■□□ 2
TTC3-223	ENST00000492275	TTC28	Q96AY4	2481 aa		27.55	■■■□□ 2
TTC3-223	ENST00000492275	RHO	P08100	348 aa		27.55	■■■□□ 2
TTC3-223	ENST00000492275	PTPN1	P18031	435 aa	Known RBP	27.55	■■■□□ 2
TTC3-223	ENST00000492275	FSHR	P23945	695 aa		27.55	■■■□□ 2
TTC3-223	ENST00000492275	ALDH1A3	P47895	512 aa		27.55	■■■□□ 2
TTC3-223	ENST00000492275	KCNH2	Q12809	1159 aa		27.55	■■■□□ 2
TTC3-223	ENST00000492275	MGAT5B	Q3V5L5	792 aa		27.55	■■■□□ 2
TTC3-223	ENST00000492275	SASS6	Q6UVJ0	657 aa		27.55	■■■□□ 2
TTC3-223	ENST00000492275	CCDC150	Q8NCX0	1101 aa		27.55	■■■□□ 2
TTC3-223	ENST00000492275	TATDN2	Q93075	761 aa		27.55	■■■□□ 2
TTC3-223	ENST00000492275	CNOT6L	Q96LI5	555 aa	Known RBP	27.55	■■■□□ 2
TTC3-223	ENST00000492275	ZNF512	Q96ME7	567 aa	Predicted RBP	27.55	■■■□□ 2
TTC3-223	ENST00000492275	NIF3L1	Q9GZT8	377 aa		27.55	■■■□□ 2
TTC3-223	ENST00000492275	ABCB6	Q9NP58	842 aa		27.55	■■■□□ 2
TTC3-223	ENST00000492275	ATF6	P18850	670 aa		27.54	■■■□□ 2
TTC3-223	ENST00000492275	CYP2F1	P24903	491 aa		27.54	■■■□□ 2
TTC3-223	ENST00000492275	EPHB3	P54753	998 aa		27.54	■■■□□ 2
TTC3-223	ENST00000492275	PLD1	Q13393	1074 aa		27.54	■■■□□ 2
TTC3-223	ENST00000492275	PABPC1L	Q4VXU2	614 aa	Known RBP	27.54	■■■□□ 2
TTC3-223	ENST00000492275	CAVIN1	Q6NZI2	390 aa	Known RBP	27.54	■■■□□ 2
TTC3-223	ENST00000492275	HS6ST3	Q8IZP7	471 aa		27.54	■■■□□ 2
TTC3-223	ENST00000492275	ITFG1	Q8TB96	612 aa		27.54	■■■□□ 2
TTC3-223	ENST00000492275	MYCBPAP	Q8TBZ2	947 aa		27.54	■■■□□ 2
TTC3-223	ENST00000492275	MYADM	Q96S97	322 aa		27.54	■■■□□ 2
TTC3-223	ENST00000492275	CORO1B	Q9BR76	489 aa		27.54	■■■□□ 2
TTC3-223	ENST00000492275	CYP3A43	Q9HB55	503 aa		27.54	■■■□□ 2
TTC3-223	ENST00000492275	AVEN	Q9NQS1	362 aa	Predicted RBP	27.54	■■■□□ 2
TTC3-223	ENST00000492275	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	27.54	■■■□□ 2
TTC3-223	ENST00000492275	TNFRSF10A	O00220	468 aa		27.53	■■■□□ 2
TTC3-223	ENST00000492275	TPD52L1	Q16890	204 aa	Predicted RBP	27.53	■■■□□ 2
TTC3-223	ENST00000492275	SLC5A9	Q2M3M2	681 aa		27.53	■■■□□ 2
TTC3-223	ENST00000492275	CFAP221	Q4G0U5	840 aa		27.53	■■■□□ 2
TTC3-223	ENST00000492275	MDH1B	Q5I0G3	518 aa		27.53	■■■□□ 2
TTC3-223	ENST00000492275	WDR44	Q5JSH3	913 aa		27.53	■■■□□ 2
TTC3-223	ENST00000492275	OTOP3	Q7RTS5	596 aa		27.53	■■■□□ 2
TTC3-223	ENST00000492275	SPATA2L	Q8IUW3	424 aa	Predicted RBP	27.53	■■■□□ 2
TTC3-223	ENST00000492275	ELMOD1	Q8N336	334 aa		27.53	■■■□□ 2
TTC3-223	ENST00000492275	TDRD5	Q8NAT2	981 aa	Known RBP	27.53	■■■□□ 2
TTC3-223	ENST00000492275	KHSRP	Q92945	711 aa	Known RBP eCLIP	27.53	■■■□□ 2	2e-7	■■■□□ 15.4
TTC3-223	ENST00000492275	MYLPF	Q96A32	169 aa		27.53	■■■□□ 2
TTC3-223	ENST00000492275	PCED1B	Q96HM7	432 aa		27.53	■■■□□ 2
TTC3-223	ENST00000492275	LRRC3	Q9BY71	257 aa		27.53	■■■□□ 2
TTC3-223	ENST00000492275	THAP9	Q9H5L6	903 aa		27.53	■■■□□ 2
TTC3-223	ENST00000492275	GPR15	P49685	360 aa		27.52	■■■□□ 2
TTC3-223	ENST00000492275	NDST1	P52848	882 aa		27.52	■■■□□ 2
TTC3-223	ENST00000492275	MAPRE1	Q15691	268 aa	Known RBP	27.52	■■■□□ 2
TTC3-223	ENST00000492275	IQCE	Q6IPM2	695 aa		27.52	■■■□□ 2
TTC3-223	ENST00000492275	C11orf57	Q6ZUT1	292 aa	Predicted RBP	27.52	■■■□□ 2
TTC3-223	ENST00000492275	GET4	Q7L5D6	327 aa	Predicted RBP	27.52	■■■□□ 2
TTC3-223	ENST00000492275	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	27.52	■■■□□ 2
TTC3-223	ENST00000492275	RNF135	Q8IUD6	432 aa		27.52	■■■□□ 2
TTC3-223	ENST00000492275	CREBRF	Q8IUR6	639 aa		27.52	■■■□□ 2
TTC3-223	ENST00000492275	ZDHHC14	Q8IZN3	488 aa		27.52	■■■□□ 2
TTC3-223	ENST00000492275	B3GALNT2	Q8NCR0	500 aa		27.52	■■■□□ 2
TTC3-223	ENST00000492275	LMO3	Q8TAP4	145 aa		27.52	■■■□□ 2
TTC3-223	ENST00000492275	FUBP3	Q96I24	572 aa	Known RBP eCLIP	27.52	■■■□□ 2
TTC3-223	ENST00000492275	FAXDC2	Q96IV6	333 aa		27.52	■■■□□ 2
TTC3-223	ENST00000492275	ANO10	Q9NW15	660 aa		27.52	■■■□□ 2
TTC3-223	ENST00000492275	MAGEC2	Q9UBF1	373 aa	Predicted RBP	27.52	■■■□□ 2
TTC3-223	ENST00000492275	HMGXB4	Q9UGU5	601 aa		27.52	■■■□□ 2
TTC3-223	ENST00000492275	GREB1	Q4ZG55	1949 aa		27.51	■■■□□ 2
TTC3-223	ENST00000492275	NRG2	O14511	850 aa	Predicted RBP	27.51	■■□□□ 1.99
TTC3-223	ENST00000492275	P4HA2	O15460	535 aa		27.51	■■□□□ 1.99
TTC3-223	ENST00000492275	AFP	P02771	609 aa	Known RBP	27.51	■■□□□ 1.99
TTC3-223	ENST00000492275	CCR2	P41597	374 aa		27.51	■■□□□ 1.99
TTC3-223	ENST00000492275	EPHA5	P54756	1037 aa		27.51	■■□□□ 1.99
TTC3-223	ENST00000492275	CYP27A1	Q02318	531 aa		27.51	■■□□□ 1.99
TTC3-223	ENST00000492275	INCA1	Q0VD86	236 aa		27.51	■■□□□ 1.99
TTC3-223	ENST00000492275	PRSS36	Q5K4E3	855 aa		27.51	■■□□□ 1.99
TTC3-223	ENST00000492275	C4orf50	Q6ZRC1	276 aa		27.51	■■□□□ 1.99
TTC3-223	ENST00000492275	UNC93A	Q86WB7	457 aa		27.51	■■□□□ 1.99
TTC3-223	ENST00000492275	GIPC2	Q8TF65	315 aa		27.51	■■□□□ 1.99
TTC3-223	ENST00000492275	PSMG2	Q969U7	264 aa		27.51	■■□□□ 1.99
TTC3-223	ENST00000492275	ACSF2	Q96CM8	615 aa	Predicted RBP	27.51	■■□□□ 1.99
TTC3-223	ENST00000492275	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	27.51	■■□□□ 1.99	2e-9	■□□□□ 8.8
TTC3-223	ENST00000492275	ASB3	Q9Y575	518 aa		27.51	■■□□□ 1.99
TTC3-223	ENST00000492275	GBP2	P32456	591 aa	Predicted RBP	27.5	■■□□□ 1.99
TTC3-223	ENST00000492275	ORC1	Q13415	861 aa		27.5	■■□□□ 1.99
TTC3-223	ENST00000492275	STX1A	Q16623	288 aa		27.5	■■□□□ 1.99
TTC3-223	ENST00000492275	KLHL40	Q2TBA0	621 aa		27.5	■■□□□ 1.99
TTC3-223	ENST00000492275	SDHAF4	Q5VUM1	108 aa		27.5	■■□□□ 1.99
TTC3-223	ENST00000492275	POTEH	Q6S545	545 aa		27.5	■■□□□ 1.99
TTC3-223	ENST00000492275	ACOT1	Q86TX2	421 aa		27.5	■■□□□ 1.99
TTC3-223	ENST00000492275	TMC8	Q8IU68	726 aa		27.5	■■□□□ 1.99
TTC3-223	ENST00000492275	CRYBG2	Q8N1P7	616 aa		27.5	■■□□□ 1.99
TTC3-223	ENST00000492275	PLCD3	Q8N3E9	789 aa		27.5	■■□□□ 1.99
TTC3-223	ENST00000492275	ENOX1	Q8TC92	643 aa	Known RBP	27.5	■■□□□ 1.99
TTC3-223	ENST00000492275	GPR152	Q8TDT2	470 aa		27.5	■■□□□ 1.99
TTC3-223	ENST00000492275	WHAMM	Q8TF30	809 aa		27.5	■■□□□ 1.99

Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms