RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 TMEM108Q6UXF1 575 aa4.01□□□□□ -1.77
CPSF3-205ENST00000489629 ZNF66Q6ZN08 573 aa4.01□□□□□ -1.77
CPSF3-205ENST00000489629 MAVSQ7Z434 540 aa4.01□□□□□ -1.77
CPSF3-205ENST00000489629 CATIPQ7Z7H3 387 aa4.01□□□□□ -1.77
CPSF3-205ENST00000489629 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.01□□□□□ -1.77
CPSF3-205ENST00000489629 VGLL2Q8N8G2 317 aa4.01□□□□□ -1.77
CPSF3-205ENST00000489629 TBC1D5Q92609 795 aa4.01□□□□□ -1.77
CPSF3-205ENST00000489629 SLC46A1Q96NT5 459 aa4.01□□□□□ -1.77
CPSF3-205ENST00000489629 GTPBP4Q9BZE4 634 aaKnown RBP4.01□□□□□ -1.77
CPSF3-205ENST00000489629 WDR26Q9H7D7 661 aa4.01□□□□□ -1.77
CPSF3-205ENST00000489629 PCDH12Q9NPG4 1184 aa4.01□□□□□ -1.77
CPSF3-205ENST00000489629 DLL3Q9NYJ7 618 aa4.01□□□□□ -1.77
CPSF3-205ENST00000489629 COL4A3BPQ9Y5P4 624 aa4.01□□□□□ -1.77
CPSF3-205ENST00000489629 ZNF804BA4D1E1 1349 aa4□□□□□ -1.77
CPSF3-205ENST00000489629 JTBO76095 146 aa4□□□□□ -1.77
CPSF3-205ENST00000489629 SNUPNO95149 360 aaKnown RBP4□□□□□ -1.77
CPSF3-205ENST00000489629 ERBB2P04626 1255 aa4□□□□□ -1.77
CPSF3-205ENST00000489629 NDUFB7P17568 137 aa4□□□□□ -1.77
CPSF3-205ENST00000489629 HDCP19113 662 aa4□□□□□ -1.77
CPSF3-205ENST00000489629 SP2Q02086 613 aa4□□□□□ -1.77
CPSF3-205ENST00000489629 EXOSC9Q06265 439 aaKnown RBP4□□□□□ -1.77
CPSF3-205ENST00000489629 GRM1Q13255 1194 aa4□□□□□ -1.77
CPSF3-205ENST00000489629 PLS1Q14651 629 aa4□□□□□ -1.77
CPSF3-205ENST00000489629 EZH2Q15910 746 aaKnown RBP4□□□□□ -1.77
CPSF3-205ENST00000489629 SRSF7Q16629 238 aaKnown RBP eCLIP4□□□□□ -1.77
CPSF3-205ENST00000489629 PGS1Q32NB8 556 aa4□□□□□ -1.77
CPSF3-205ENST00000489629 BRDTQ58F21 947 aaPredicted RBP4□□□□□ -1.77
CPSF3-205ENST00000489629 AARS2Q5JTZ9 985 aaKnown RBP4□□□□□ -1.77
CPSF3-205ENST00000489629 EPHA10Q5JZY3 1008 aa4□□□□□ -1.77
CPSF3-205ENST00000489629 ICE2Q659A1 982 aa4□□□□□ -1.77
CPSF3-205ENST00000489629 SFRP4Q6FHJ7 346 aaPredicted RBP4□□□□□ -1.77
CPSF3-205ENST00000489629 C11orf87Q6NUJ2 197 aa4□□□□□ -1.77
CPSF3-205ENST00000489629 TCF7L1Q9HCS4 588 aa4□□□□□ -1.77
CPSF3-205ENST00000489629 SSX2IPQ9Y2D8 614 aa4□□□□□ -1.77
CPSF3-205ENST00000489629 SLC16A3O15427 465 aaKnown RBP3.99□□□□□ -1.77
CPSF3-205ENST00000489629 TLR5O60602 858 aa3.99□□□□□ -1.77
CPSF3-205ENST00000489629 PRR35P0CG20 571 aa3.99□□□□□ -1.77
CPSF3-205ENST00000489629 AKAP5P24588 427 aa3.99□□□□□ -1.77
CPSF3-205ENST00000489629 LIPAP38571 399 aa3.99□□□□□ -1.77
CPSF3-205ENST00000489629 LONRF3Q496Y0 759 aa3.99□□□□□ -1.77
CPSF3-205ENST00000489629 TMEM119Q4V9L6 283 aa3.99□□□□□ -1.77
CPSF3-205ENST00000489629 SLC44A4Q53GD3 710 aa3.99□□□□□ -1.77
CPSF3-205ENST00000489629 MTX3Q5HYI7 312 aa3.99□□□□□ -1.77
CPSF3-205ENST00000489629 WDR53Q7Z5U6 358 aaPredicted RBP3.99□□□□□ -1.77
CPSF3-205ENST00000489629 Q8N9P0 234 aaPredicted RBP3.99□□□□□ -1.77
CPSF3-205ENST00000489629 HSPBAP1Q96EW2 488 aa3.99□□□□□ -1.77
CPSF3-205ENST00000489629 MVB12AQ96EY5 273 aa3.99□□□□□ -1.77
CPSF3-205ENST00000489629 SEMA4CQ9C0C4 833 aa3.99□□□□□ -1.77
CPSF3-205ENST00000489629 SH2B3Q9UQQ2 575 aa3.99□□□□□ -1.77
CPSF3-205ENST00000489629 TISP43B9A030 160 aa3.98□□□□□ -1.77
CPSF3-205ENST00000489629 MYO1FO00160 1098 aa3.98□□□□□ -1.77
CPSF3-205ENST00000489629 TP73O15350 636 aa3.98□□□□□ -1.77
CPSF3-205ENST00000489629 IL33O95760 270 aa3.98□□□□□ -1.77
CPSF3-205ENST00000489629 ONECUT2O95948 504 aa3.98□□□□□ -1.77
CPSF3-205ENST00000489629 IL6RP08887 468 aaPredicted RBP3.98□□□□□ -1.77
CPSF3-205ENST00000489629 ATXN1LP0C7T5 689 aaKnown RBP3.98□□□□□ -1.77
CPSF3-205ENST00000489629 PPIFP30405 207 aaKnown RBP3.98□□□□□ -1.77
CPSF3-205ENST00000489629 ALDH9A1P49189 494 aa3.98□□□□□ -1.77
CPSF3-205ENST00000489629 SOX8P57073 446 aa3.98□□□□□ -1.77
CPSF3-205ENST00000489629 LOXL3P58215 753 aa3.98□□□□□ -1.77
CPSF3-205ENST00000489629 LILRA4P59901 499 aa3.98□□□□□ -1.77
CPSF3-205ENST00000489629 ZNF626Q68DY1 528 aa3.98□□□□□ -1.77
CPSF3-205ENST00000489629 C9orf106Q8NAJ2 232 aa3.98□□□□□ -1.77
CPSF3-205ENST00000489629 BRIX1Q8TDN6 353 aaKnown RBP3.98□□□□□ -1.77
CPSF3-205ENST00000489629 CHMP4CQ96CF2 233 aa3.98□□□□□ -1.77
CPSF3-205ENST00000489629 SLC35A4Q96G79 324 aa3.98□□□□□ -1.77
CPSF3-205ENST00000489629 PTDSS2Q9BVG9 487 aa3.98□□□□□ -1.77
CPSF3-205ENST00000489629 TTYH3Q9C0H2 523 aa3.98□□□□□ -1.77
CPSF3-205ENST00000489629 DUSP22Q9NRW4 184 aa3.98□□□□□ -1.77
CPSF3-205ENST00000489629 HOMER2Q9NSB8 354 aa3.98□□□□□ -1.77
CPSF3-205ENST00000489629 SH3BP4Q9P0V3 963 aa3.98□□□□□ -1.77
CPSF3-205ENST00000489629 SERTAD3Q9UJW9 196 aa3.98□□□□□ -1.77
CPSF3-205ENST00000489629 LUC7L2Q9Y383 392 aaKnown RBP3.98□□□□□ -1.77
CPSF3-205ENST00000489629 KRTAP29-1A8MX34 341 aaPredicted RBP3.97□□□□□ -1.77
CPSF3-205ENST00000489629 H3BUI4 141 aa3.97□□□□□ -1.77
CPSF3-205ENST00000489629 ADAMTS3O15072 1205 aa3.97□□□□□ -1.77
CPSF3-205ENST00000489629 ERC2O15083 957 aa3.97□□□□□ -1.77
CPSF3-205ENST00000489629 UNC5CO95185 931 aa3.97□□□□□ -1.77
CPSF3-205ENST00000489629 ITGB6P18564 788 aa3.97□□□□□ -1.77
CPSF3-205ENST00000489629 KELP23276 732 aa3.97□□□□□ -1.77
CPSF3-205ENST00000489629 CLCN2P51788 898 aa3.97□□□□□ -1.77
CPSF3-205ENST00000489629 EEFSECP57772 596 aaKnown RBP3.97□□□□□ -1.77
CPSF3-205ENST00000489629 TUBA4AP68366 448 aa3.97□□□□□ -1.77
CPSF3-205ENST00000489629 IQCB1Q15051 598 aa3.97□□□□□ -1.77
CPSF3-205ENST00000489629 TREML2Q5T2D2 321 aa3.97□□□□□ -1.77
CPSF3-205ENST00000489629 SLC29A4Q7RTT9 530 aa3.97□□□□□ -1.77
CPSF3-205ENST00000489629 ZNF804AQ7Z570 1209 aa3.97□□□□□ -1.77
CPSF3-205ENST00000489629 NEK8Q86SG6 692 aa3.97□□□□□ -1.77
CPSF3-205ENST00000489629 CELF5Q8N6W0 485 aaKnown RBP3.97□□□□□ -1.77
CPSF3-205ENST00000489629 PLBD2Q8NHP8 589 aa3.97□□□□□ -1.77
CPSF3-205ENST00000489629 ATG4AQ8WYN0 398 aa3.97□□□□□ -1.77
CPSF3-205ENST00000489629 HPS3Q969F9 1004 aa3.97□□□□□ -1.77
CPSF3-205ENST00000489629 NUP88Q99567 741 aaPredicted RBP3.97□□□□□ -1.77
CPSF3-205ENST00000489629 FSD1LQ9BXM9 530 aa3.97□□□□□ -1.77
CPSF3-205ENST00000489629 NDRG4Q9ULP0 352 aaKnown RBP3.97□□□□□ -1.77
CPSF3-205ENST00000489629 PCDHA6Q9UN73 950 aa3.97□□□□□ -1.77
CPSF3-205ENST00000489629 BTBD3Q9Y2F9 522 aa3.97□□□□□ -1.77
CPSF3-205ENST00000489629 PLEKHM1Q9Y4G2 1056 aa3.97□□□□□ -1.77
CPSF3-205ENST00000489629 TJP3O95049 919 aa3.96□□□□□ -1.78
CPSF3-205ENST00000489629 ALDH2P05091 517 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms