RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 GRID2IPA4D2P6 1211 aa12.18□□□□□ -0.46
C9orf3-220ENST00000489318 HCRTO43612 131 aa12.18□□□□□ -0.46
C9orf3-220ENST00000489318 BUB1O43683 1085 aa12.18□□□□□ -0.46
C9orf3-220ENST00000489318 EFEMP2O95967 443 aa12.18□□□□□ -0.46
C9orf3-220ENST00000489318 CALB1P05937 261 aa12.18□□□□□ -0.46
C9orf3-220ENST00000489318 IBSPP21815 317 aaPredicted RBP12.18□□□□□ -0.46
C9orf3-220ENST00000489318 LMO2P25791 158 aa12.18□□□□□ -0.46
C9orf3-220ENST00000489318 BRCC3P46736 316 aa12.18□□□□□ -0.46
C9orf3-220ENST00000489318 RPL34P49207 117 aaKnown RBP12.18□□□□□ -0.46
C9orf3-220ENST00000489318 GATMP50440 423 aa12.18□□□□□ -0.46
C9orf3-220ENST00000489318 WDR5P61964 334 aaKnown RBP12.18□□□□□ -0.46
C9orf3-220ENST00000489318 AMPD2Q01433 879 aa12.18□□□□□ -0.46
C9orf3-220ENST00000489318 RNASELQ05823 741 aaKnown RBP12.18□□□□□ -0.46
C9orf3-220ENST00000489318 PPP1R26Q5T8A7 1209 aaPredicted RBP12.18□□□□□ -0.46
C9orf3-220ENST00000489318 PLEKHA7Q6IQ23 1121 aa12.18□□□□□ -0.46
C9orf3-220ENST00000489318 C11orf63Q6NUN7 778 aa12.18□□□□□ -0.46
C9orf3-220ENST00000489318 DENND1BQ6P3S1 775 aa12.18□□□□□ -0.46
C9orf3-220ENST00000489318 DSTYKQ6XUX3 929 aa12.18□□□□□ -0.46
C9orf3-220ENST00000489318 B3GALNT2Q8NCR0 500 aa12.18□□□□□ -0.46
C9orf3-220ENST00000489318 SLC35G2Q8TBE7 412 aa12.18□□□□□ -0.46
C9orf3-220ENST00000489318 CPA5Q8WXQ8 436 aa12.18□□□□□ -0.46
C9orf3-220ENST00000489318 ZNF689Q96CS4 500 aaPredicted RBP12.18□□□□□ -0.46
C9orf3-220ENST00000489318 HEXIM2Q96MH2 286 aaKnown RBP12.18□□□□□ -0.46
C9orf3-220ENST00000489318 NAPGQ99747 312 aaPredicted RBP12.18□□□□□ -0.46
C9orf3-220ENST00000489318 RTP3Q9BQQ7 232 aa12.18□□□□□ -0.46
C9orf3-220ENST00000489318 L2HGDHQ9H9P8 463 aa12.18□□□□□ -0.46
C9orf3-220ENST00000489318 MARCH5Q9NX47 278 aa12.18□□□□□ -0.46
C9orf3-220ENST00000489318 DNAJB4Q9UDY4 337 aa12.18□□□□□ -0.46
C9orf3-220ENST00000489318 CNOT8Q9UFF9 292 aaKnown RBP12.18□□□□□ -0.46
C9orf3-220ENST00000489318 CYTH4Q9UIA0 394 aa12.18□□□□□ -0.46
C9orf3-220ENST00000489318 STRIP2Q9ULQ0 834 aa12.18□□□□□ -0.46
C9orf3-220ENST00000489318 F8W810 466 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 M0QYV0 167 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 SYN3O14994 580 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 AMHP03971 560 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 RRM1P23921 792 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 PCSK1P29120 753 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 CASQ1P31415 396 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 GABRB2P47870 512 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 PDCLQ13371 301 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 PPIGQ13427 754 aaKnown RBP eCLIP12.17□□□□□ -0.46
C9orf3-220ENST00000489318 GOLGA7BQ2TAP0 167 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 PTPN20Q4JDL3 420 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 KIAA0319Q5VV43 1072 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 PAPD7Q5XG87 772 aaKnown RBP12.17□□□□□ -0.46
C9orf3-220ENST00000489318 MMS22LQ6ZRQ5 1243 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 TTC30AQ86WT1 665 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 C12orf29Q8N999 325 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 STK32AQ8WU08 396 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 UBE2Q2Q8WVN8 375 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 RABGGTAQ92696 567 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 FAM193BQ96PV7 902 aaPredicted RBP12.17□□□□□ -0.46
C9orf3-220ENST00000489318 PKMYT1Q99640 499 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 HNRNPABQ99729 332 aaKnown RBP12.17□□□□□ -0.46
C9orf3-220ENST00000489318 SYT15Q9BQS2 421 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 ACBD6Q9BR61 282 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 C11orf70Q9BRQ4 267 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 ABCB6Q9NP58 842 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 OSGEPQ9NPF4 335 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 CYLDQ9NQC7 956 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 DDX43Q9NXZ2 648 aaKnown RBP12.17□□□□□ -0.46
C9orf3-220ENST00000489318 ADAM22Q9P0K1 906 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 ADAM28Q9UKQ2 775 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 CDH9Q9ULB4 789 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 JRKLQ9Y4A0 524 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 SCINQ9Y6U3 715 aa12.17□□□□□ -0.46
C9orf3-220ENST00000489318 CTAGE9A4FU28 777 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 TBKBP1A7MCY6 615 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 NRP1O14786 923 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 ATMINO43313 823 aaPredicted RBP12.16□□□□□ -0.46
C9orf3-220ENST00000489318 TRAPPC3O43617 180 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 PALMO75781 387 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 TKTP29401 623 aaKnown RBP12.16□□□□□ -0.46
C9orf3-220ENST00000489318 SSTR3P32745 418 aaPredicted RBP12.16□□□□□ -0.46
C9orf3-220ENST00000489318 OR1G1P47890 313 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 SLC11A1P49279 550 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 BCAT1P54687 386 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 DEFB103AP81534 67 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 PLCB3Q01970 1234 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 BST2Q10589 180 aaKnown RBP12.16□□□□□ -0.46
C9orf3-220ENST00000489318 PAN2Q504Q3 1202 aaKnown RBP12.16□□□□□ -0.46
C9orf3-220ENST00000489318 INTS6LQ5JSJ4 861 aaKnown RBP12.16□□□□□ -0.46
C9orf3-220ENST00000489318 PPP1R15BQ5SWA1 713 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 LIN9Q5TKA1 542 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 CMTR2Q8IYT2 770 aaKnown RBP12.16□□□□□ -0.46
C9orf3-220ENST00000489318 RNF168Q8IYW5 571 aaPredicted RBP12.16□□□□□ -0.46
C9orf3-220ENST00000489318 SYCE1Q8N0S2 351 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 FUKQ8N0W3 1084 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 ANKRD52Q8NB46 1076 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 MSANTD4Q8NCY6 345 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 C3orf20Q8ND61 904 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 ZNF564Q8TBZ8 553 aaPredicted RBP12.16□□□□□ -0.46
C9orf3-220ENST00000489318 SLC35F5Q8WV83 523 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 NUP85Q9BW27 656 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 SLC4A5Q9BY07 1137 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 CWH43Q9H720 699 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 CRTAC1Q9NQ79 661 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 FAM49BQ9NUQ9 324 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 CTTNBP2NLQ9P2B4 639 aa12.16□□□□□ -0.46
C9orf3-220ENST00000489318 WDR35Q9P2L0 1181 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms