RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-231	ENST00000488905	GART	P22102	1010 aa		19.83	■□□□□ 0.77
HDAC6-231	ENST00000488905	NLRP12	P59046	1061 aa		19.83	■□□□□ 0.77
HDAC6-231	ENST00000488905	ITPRIPL2	Q3MIP1	535 aa		19.83	■□□□□ 0.77
HDAC6-231	ENST00000488905	LONP2	Q86WA8	852 aa		19.83	■□□□□ 0.77
HDAC6-231	ENST00000488905	PDCL2	Q8N4E4	241 aa		19.83	■□□□□ 0.77
HDAC6-231	ENST00000488905	LEO1	Q8WVC0	666 aa	Predicted RBP	19.83	■□□□□ 0.77
HDAC6-231	ENST00000488905	L1RE1	Q9UN81	338 aa		19.83	■□□□□ 0.77
HDAC6-231	ENST00000488905	FRMD3	A2A2Y4	597 aa		19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	LDHA	P00338	332 aa	Known RBP	19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	RET	P07949	1114 aa		19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	IDE	P14735	1019 aa		19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	DDX6	P26196	483 aa	Known RBP eCLIP	19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	AVPR1A	P37288	418 aa		19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	GPR15	P49685	360 aa		19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	ATXN1	P54253	815 aa	Known RBP	19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	CEBPZ	Q03701	1054 aa	Known RBP	19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	SPEM2	Q0P670	501 aa		19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	ALCAM	Q13740	583 aa		19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	SIM2	Q14190	667 aa	Predicted RBP	19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	NFE2	Q16621	373 aa	Predicted RBP	19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	FAM173B	Q6P4H8	233 aa		19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	CCDC73	Q6ZRK6	1079 aa		19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	SYNPO	Q8N3V7	929 aa		19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	LRRC52	Q8N7C0	313 aa		19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	STKLD1	Q8NE28	680 aa		19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	PI4K2A	Q9BTU6	479 aa		19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	FGFBP2	Q9BYJ0	223 aa		19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	KIF9	Q9HAQ2	790 aa		19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	C2orf42	Q9NWW7	574 aa		19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	ITGA11	Q9UKX5	1188 aa		19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	AGAP1	Q9UPQ3	857 aa		19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	CCL26	Q9Y258	94 aa		19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	PCDHB13	Q9Y5F0	798 aa		19.82	■□□□□ 0.76
HDAC6-231	ENST00000488905	TULP1	O00294	542 aa	Predicted RBP	19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	HUS1	O60921	280 aa		19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	LRP3	O75074	770 aa		19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	PRPF40A	O75400	957 aa	Known RBP	19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	F11	P03951	625 aa		19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	CSH1	P0DML2	217 aa		19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	CSH2	P0DML3	217 aa		19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	CNR2	P34972	360 aa		19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	STAT6	P42226	847 aa		19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	BFSP1	Q12934	665 aa		19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	SRSF5	Q13243	272 aa	Known RBP	19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	HEATR6	Q6AI08	1181 aa	Known RBP	19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	SYCP3	Q8IZU3	236 aa		19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	TMEM86A	Q8N2M4	240 aa		19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	MAB21L3	Q8N8X9	362 aa		19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	CXorf38	Q8TB03	319 aa		19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	CACTIN	Q8WUQ7	758 aa	Known RBP	19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	USP13	Q92995	863 aa	Predicted RBP	19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	FAM84A	Q96KN4	292 aa		19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	FAM83C	Q9BQN1	747 aa		19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	ACBD6	Q9BR61	282 aa		19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	CBWD1	Q9BRT8	395 aa		19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	ABCB6	Q9NP58	842 aa		19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	HPS4	Q9NQG7	708 aa		19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	DDX43	Q9NXZ2	648 aa	Known RBP	19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	MAGED2	Q9UNF1	606 aa	Predicted RBP	19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905	MORC2	Q9Y6X9	1032 aa	Predicted RBP	19.81	■□□□□ 0.76
HDAC6-231	ENST00000488905		A0A087X0B3	334 aa		19.8	■□□□□ 0.76
HDAC6-231	ENST00000488905	GOLGA8IP	A6NC78	632 aa		19.8	■□□□□ 0.76
HDAC6-231	ENST00000488905	GOLGA8J	A6NMD2	632 aa		19.8	■□□□□ 0.76
HDAC6-231	ENST00000488905	HR	O43593	1189 aa		19.8	■□□□□ 0.76
HDAC6-231	ENST00000488905	SYT1	P21579	422 aa		19.8	■□□□□ 0.76
HDAC6-231	ENST00000488905	MYL7	Q01449	175 aa		19.8	■□□□□ 0.76
HDAC6-231	ENST00000488905	INTS6L	Q5JSJ4	861 aa	Known RBP	19.8	■□□□□ 0.76
HDAC6-231	ENST00000488905	SDHAF4	Q5VUM1	108 aa		19.8	■□□□□ 0.76
HDAC6-231	ENST00000488905	MRPS31	Q92665	395 aa	Known RBP	19.8	■□□□□ 0.76
HDAC6-231	ENST00000488905	PKMYT1	Q99640	499 aa		19.8	■□□□□ 0.76
HDAC6-231	ENST00000488905	RTKN	Q9BST9	563 aa		19.8	■□□□□ 0.76
HDAC6-231	ENST00000488905	MTMR12	Q9C0I1	747 aa		19.8	■□□□□ 0.76
HDAC6-231	ENST00000488905	GKN1	Q9NS71	199 aa		19.8	■□□□□ 0.76
HDAC6-231	ENST00000488905	TDP1	Q9NUW8	608 aa		19.8	■□□□□ 0.76
HDAC6-231	ENST00000488905	ACACB	O00763	2458 aa		19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	EPG5	Q9HCE0	2579 aa		19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	SOBP	A7XYQ1	873 aa		19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	EXTL3	O43909	919 aa		19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	TADA3	O75528	432 aa		19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	ACAT1	P24752	427 aa	Known RBP	19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	HOXA6	P31267	233 aa		19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	RUNX3	Q13761	415 aa		19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	TXNDC8	Q6A555	127 aa		19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	SCARA3	Q6AZY7	606 aa		19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	TRIM68	Q6AZZ1	485 aa		19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	CSGALNACT2	Q8N6G5	542 aa		19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	RIN3	Q8TB24	985 aa		19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	SPATA18	Q8TC71	538 aa		19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	NOC3L	Q8WTT2	800 aa	Known RBP	19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	CHFR	Q96EP1	664 aa		19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	USP28	Q96RU2	1077 aa		19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	EBF3	Q9H4W6	596 aa		19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	PANK4	Q9NVE7	773 aa		19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	GDAP2	Q9NXN4	497 aa		19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	UXT	Q9UBK9	157 aa	Predicted RBP	19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	SIX4	Q9UIU6	781 aa		19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	CACNA1B	Q00975	2339 aa		19.79	■□□□□ 0.76
HDAC6-231	ENST00000488905	CNOT1	A5YKK6	2376 aa	Known RBP	19.78	■□□□□ 0.76

Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms