RNA–Protein interactions for RNA: ENST00000487461.1

VPS16-208, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS16, Length 634 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-208ENST00000487461 DDR2Q16832 855 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 C1orf228Q6PIY5 440 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 OSTM1Q86WC4 334 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 RALGPS2Q86X27 583 aaPredicted RBP13.12□□□□□ -0.31
VPS16-208ENST00000487461 CCDC65Q8IXS2 484 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 CMTM8Q8IZV2 173 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 GPD1LQ8N335 351 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 SPEM1Q8N4L4 309 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 CELF5Q8N6W0 485 aaKnown RBP13.12□□□□□ -0.31
VPS16-208ENST00000487461 LRRC52Q8N7C0 313 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 MAB21L3Q8N8X9 362 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 GCNAQ96QF7 691 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 PKMYT1Q99640 499 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 MTMR12Q9C0I1 747 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 GKN1Q9NS71 199 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 C2orf42Q9NWW7 574 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 GDAP2Q9NXN4 497 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 DDX43Q9NXZ2 648 aaKnown RBP13.12□□□□□ -0.31
VPS16-208ENST00000487461 ITGA11Q9UKX5 1188 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 CEP250Q9BV73 2442 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 TSC2P49815 1807 aa13.11□□□□□ -0.31
VPS16-208ENST00000487461 K7ELQ4 463 aaPredicted RBP13.11□□□□□ -0.31
VPS16-208ENST00000487461 SPTLC2O15270 562 aa13.11□□□□□ -0.31
VPS16-208ENST00000487461 KRT19P08727 400 aa13.11□□□□□ -0.31
VPS16-208ENST00000487461 TGM1P22735 817 aa13.11□□□□□ -0.31
VPS16-208ENST00000487461 CYP2F1P24903 491 aa13.11□□□□□ -0.31
VPS16-208ENST00000487461 HOXD13P35453 343 aa13.11□□□□□ -0.31
VPS16-208ENST00000487461 PLCB2Q00722 1185 aa13.11□□□□□ -0.31
VPS16-208ENST00000487461 MYL7Q01449 175 aa13.11□□□□□ -0.31
VPS16-208ENST00000487461 DMWDQ09019 674 aa13.11□□□□□ -0.31
VPS16-208ENST00000487461 LRRC32Q14392 662 aa13.11□□□□□ -0.31
VPS16-208ENST00000487461 PUM1Q14671 1186 aaKnown RBP eCLIP13.11□□□□□ -0.31
VPS16-208ENST00000487461 PPP2R5DQ14738 602 aa13.11□□□□□ -0.31
VPS16-208ENST00000487461 NFE2Q16621 373 aaPredicted RBP13.11□□□□□ -0.31
VPS16-208ENST00000487461 CCDC142Q17RM4 750 aa13.11□□□□□ -0.31
VPS16-208ENST00000487461 SOWAHAQ2M3V2 549 aa13.11□□□□□ -0.31
VPS16-208ENST00000487461 INTS6LQ5JSJ4 861 aaKnown RBP13.11□□□□□ -0.31
VPS16-208ENST00000487461 DGKKQ5KSL6 1271 aa13.11□□□□□ -0.31
VPS16-208ENST00000487461 LMBRD2Q68DH5 695 aaPredicted RBP13.11□□□□□ -0.31
VPS16-208ENST00000487461 TXNDC8Q6A555 127 aa13.11□□□□□ -0.31
VPS16-208ENST00000487461 Q6ZS52 159 aa13.11□□□□□ -0.31
VPS16-208ENST00000487461 TMEM86AQ8N2M4 240 aa13.11□□□□□ -0.31
VPS16-208ENST00000487461 LEO1Q8WVC0 666 aaPredicted RBP13.11□□□□□ -0.31
VPS16-208ENST00000487461 USP13Q92995 863 aaPredicted RBP13.11□□□□□ -0.31
VPS16-208ENST00000487461 FAM83CQ9BQN1 747 aa13.11□□□□□ -0.31
VPS16-208ENST00000487461 KBTBD4Q9NVX7 518 aa13.11□□□□□ -0.31
VPS16-208ENST00000487461 THG1LQ9NWX6 298 aaKnown RBP13.11□□□□□ -0.31
VPS16-208ENST00000487461 GTF3C4Q9UKN8 822 aa13.11□□□□□ -0.31
VPS16-208ENST00000487461 MAGED2Q9UNF1 606 aaPredicted RBP13.11□□□□□ -0.31
VPS16-208ENST00000487461 CCL26Q9Y258 94 aa13.11□□□□□ -0.31
VPS16-208ENST00000487461 SNX9Q9Y5X1 595 aa13.11□□□□□ -0.31
VPS16-208ENST00000487461 OTOL1A6NHN0 477 aaPredicted RBP13.1□□□□□ -0.31
VPS16-208ENST00000487461 ZNF233A6NK53 670 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 CHURC1-FNTBB4DL54 471 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 K7ESF4 209 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 GABRDO14764 452 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 HRO43593 1189 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 PPP6R2O75170 966 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 ATP2C2O75185 946 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 CSH1P0DML2 217 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 CSH2P0DML3 217 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 HOXC13P31276 330 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 FNTBP49356 437 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 LPAL2Q16609 132 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 RSPO4Q2I0M5 234 aaPredicted RBP13.1□□□□□ -0.31
VPS16-208ENST00000487461 ITPRIPL2Q3MIP1 535 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 DGLUCYQ7Z3D6 616 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 LIMS2Q7Z4I7 341 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 MON1AQ86VX9 555 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 CBWD2Q8IUF1 395 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 ADGRF2Q8IZF7 708 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 TOP6BLQ8N6T0 577 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 OR5B17Q8NGF7 314 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 RIN3Q8TB24 985 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 SECISBP2LQ93073 1101 aaKnown RBP13.1□□□□□ -0.31
VPS16-208ENST00000487461 TRIM9Q9C026 710 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 TNMDQ9H2S6 317 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 ABCB6Q9NP58 842 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 HPS4Q9NQG7 708 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 INTS13Q9NVM9 706 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 DLL3Q9NYJ7 618 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 ZMYM5Q9UJ78 669 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 PTPRJQ12913 1337 aa13.1□□□□□ -0.31
VPS16-208ENST00000487461 FRYLO94915 3013 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 SOBPA7XYQ1 873 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 KIAA0391O15091 583 aaKnown RBP13.09□□□□□ -0.31
VPS16-208ENST00000487461 NOL4O94818 638 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 PAPSS2O95340 614 aaPredicted RBP13.09□□□□□ -0.31
VPS16-208ENST00000487461 TMEM191BP0C7N4 346 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 LMO2P25791 158 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 DDX6P26196 483 aaKnown RBP eCLIP13.09□□□□□ -0.31
VPS16-208ENST00000487461 AVPR1AP37288 418 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 LHX1P48742 406 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 RPL10AP62906 217 aaKnown RBP13.09□□□□□ -0.31
VPS16-208ENST00000487461 CCINQ13939 588 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 DUOXA2Q1HG44 320 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 FOXD4L5Q5VV16 416 aaPredicted RBP13.09□□□□□ -0.31
VPS16-208ENST00000487461 TRIM68Q6AZZ1 485 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 FAM171BQ6P995 826 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 SHC4Q6S5L8 630 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms