RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 CCDC163A0A0D9SF12 145 aa14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 TM4SF5O14894 197 aa14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 HCRTO43612 131 aa14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 PPP1R37O75864 691 aa14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 KCNK5O95279 499 aa14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 CDC25CP30307 473 aa14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 GRSF1Q12849 480 aaKnown RBP eCLIP14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 VEPH1Q14D04 833 aa14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 TAF12Q16514 161 aa14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 LARP1BQ659C4 914 aaKnown RBP14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 RNF43Q68DV7 783 aa14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 TRIM68Q6AZZ1 485 aa14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 RASSF8Q8NHQ8 419 aa14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 SMOC1Q9H4F8 434 aa14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 HPS4Q9NQG7 708 aa14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 ABI2Q9NYB9 513 aaPredicted RBP14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 TBC1D7Q9P0N9 293 aa14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 RALYQ9UKM9 306 aaKnown RBP14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 AGO2Q9UKV8 859 aaKnown RBP14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 SMC3Q9UQE7 1217 aa14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 DERAQ9Y315 318 aa14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 C2CD2Q9Y426 696 aa14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 PCDHGA5Q9Y5G8 931 aa14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 CLIC4Q9Y696 253 aa14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 STYXL1Q9Y6J8 313 aa14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 PTPRDP23468 1912 aa14.94□□□□□ -0.02
SQSTM1-208ENST00000485412 SLC26A4O43511 780 aa14.93□□□□□ -0.02
SQSTM1-208ENST00000485412 AKAP3O75969 853 aa14.93□□□□□ -0.02
SQSTM1-208ENST00000485412 HAPLN1P10915 354 aaPredicted RBP14.93□□□□□ -0.02
SQSTM1-208ENST00000485412 HMGA1P17096 107 aaKnown RBP14.93□□□□□ -0.02
SQSTM1-208ENST00000485412 WEE1P30291 646 aa14.93□□□□□ -0.02
SQSTM1-208ENST00000485412 LONP1P36776 959 aaKnown RBP14.93□□□□□ -0.02
SQSTM1-208ENST00000485412 MPLP40238 635 aa14.93□□□□□ -0.02
SQSTM1-208ENST00000485412 TAF6P49848 677 aa14.93□□□□□ -0.02
SQSTM1-208ENST00000485412 CASP5P51878 434 aa14.93□□□□□ -0.02
SQSTM1-208ENST00000485412 PSAPL1Q6NUJ1 521 aa14.93□□□□□ -0.02
SQSTM1-208ENST00000485412 FAM173BQ6P4H8 233 aa14.93□□□□□ -0.02
SQSTM1-208ENST00000485412 CD302Q8IX05 232 aa14.93□□□□□ -0.02
SQSTM1-208ENST00000485412 SAAL1Q96ER3 474 aa14.93□□□□□ -0.02
SQSTM1-208ENST00000485412 TSPAN18Q96SJ8 248 aa14.93□□□□□ -0.02
SQSTM1-208ENST00000485412 LSM14BQ9BX40 385 aaKnown RBP14.93□□□□□ -0.02
SQSTM1-208ENST00000485412 STRA6Q9BX79 667 aa14.93□□□□□ -0.02
SQSTM1-208ENST00000485412 ASB7Q9H672 318 aa14.93□□□□□ -0.02
SQSTM1-208ENST00000485412 VPS45Q9NRW7 570 aa14.93□□□□□ -0.02
SQSTM1-208ENST00000485412 GKN1Q9NS71 199 aa14.93□□□□□ -0.02
SQSTM1-208ENST00000485412 FAM208BQ5VWN6 2430 aa14.93□□□□□ -0.02
SQSTM1-208ENST00000485412 MYMKA6NI61 221 aa14.92□□□□□ -0.02
SQSTM1-208ENST00000485412 TADA3O75528 432 aa14.92□□□□□ -0.02
SQSTM1-208ENST00000485412 PROS1P07225 676 aa14.92□□□□□ -0.02
SQSTM1-208ENST00000485412 ARSAP15289 507 aa14.92□□□□□ -0.02
SQSTM1-208ENST00000485412 TUFMP49411 452 aaKnown RBP14.92□□□□□ -0.02
SQSTM1-208ENST00000485412 NLRP12P59046 1061 aa14.92□□□□□ -0.02
SQSTM1-208ENST00000485412 TMEM196Q5HYL7 178 aa14.92□□□□□ -0.02
SQSTM1-208ENST00000485412 PLA2G2CQ5R387 149 aa14.92□□□□□ -0.02
SQSTM1-208ENST00000485412 FSTL4Q6MZW2 842 aa14.92□□□□□ -0.02
SQSTM1-208ENST00000485412 ZNF720Q7Z2F6 126 aa14.92□□□□□ -0.02
SQSTM1-208ENST00000485412 MAB21L3Q8N8X9 362 aa14.92□□□□□ -0.02
SQSTM1-208ENST00000485412 POMGNT1Q8WZA1 660 aa14.92□□□□□ -0.02
SQSTM1-208ENST00000485412 USP13Q92995 863 aaPredicted RBP14.92□□□□□ -0.02
SQSTM1-208ENST00000485412 CLIC6Q96NY7 704 aa14.92□□□□□ -0.02
SQSTM1-208ENST00000485412 PI4K2AQ9BTU6 479 aa14.92□□□□□ -0.02
SQSTM1-208ENST00000485412 CCSER1Q9C0I3 900 aa14.92□□□□□ -0.02
SQSTM1-208ENST00000485412 ST6GALNAC4Q9H4F1 302 aa14.92□□□□□ -0.02
SQSTM1-208ENST00000485412 EBF3Q9H4W6 596 aa14.92□□□□□ -0.02
SQSTM1-208ENST00000485412 FBRSL1Q9HCM7 1045 aaKnown RBP14.92□□□□□ -0.02
SQSTM1-208ENST00000485412 HSFX1Q9UBD0 423 aa14.92□□□□□ -0.02
SQSTM1-208ENST00000485412 CEP295Q9C0D2 2601 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 KPNA7A9QM74 516 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 TULP1O00294 542 aaPredicted RBP14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 RNF40O75150 1001 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 F11P03951 625 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 ACAT1P24752 427 aaKnown RBP14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 POLR2BP30876 1174 aaKnown RBP14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 DDIT3P35638 169 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 AVPR1AP37288 418 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 AMPD2Q01433 879 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 BFSP1Q12934 665 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 RUNX3Q13761 415 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 ELF2Q15723 593 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 TXNDC8Q6A555 127 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 TCEAL6Q6IPX3 200 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 OSTM1Q86WC4 334 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 CMTM8Q8IZV2 173 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 PDCL2Q8N4E4 241 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 CAMKK1Q8N5S9 505 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 C1orf127Q8N9H9 656 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 CXorf38Q8TB03 319 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 TCEAL3Q969E4 200 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 DNAJC19Q96DA6 116 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 ZC3H10Q96K80 434 aaKnown RBP14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 HHIPQ96QV1 700 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 FAM83CQ9BQN1 747 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 FAM213AQ9BRX8 229 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 EDEM2Q9BV94 578 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 ZMYM5Q9UJ78 669 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 FBXO2Q9UK22 296 aaPredicted RBP14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 L1RE1Q9UN81 338 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 NUP205Q92621 2012 aa14.91□□□□□ -0.02
SQSTM1-208ENST00000485412 A0A087X0B3 334 aa14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 VPS37CA5D8V6 355 aaPredicted RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms