RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 PHF13Q86YI8 300 aaPredicted RBP10.79□□□□□ -0.68
USP39-215ENST00000481409 RHOT2Q8IXI1 618 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 RNF168Q8IYW5 571 aaPredicted RBP10.79□□□□□ -0.68
USP39-215ENST00000481409 SLC39A11Q8N1S5 342 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 B3GALNT2Q8NCR0 500 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 LNX1Q8TBB1 728 aaPredicted RBP10.79□□□□□ -0.68
USP39-215ENST00000481409 C2orf15Q8WU43 125 aaKnown RBP10.79□□□□□ -0.68
USP39-215ENST00000481409 TMEM169Q96HH4 297 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 IGSF21Q96ID5 467 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 SAMD11Q96NU1 681 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 HNRNPABQ99729 332 aaKnown RBP10.79□□□□□ -0.68
USP39-215ENST00000481409 UBXN6Q9BZV1 441 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 MARCH5Q9NX47 278 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 SPG21Q9NZD8 308 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.79□□□□□ -0.68
USP39-215ENST00000481409 PUF60Q9UHX1 559 aaKnown RBP10.79□□□□□ -0.68
USP39-215ENST00000481409 STRIP2Q9ULQ0 834 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 ZMYND8Q9ULU4 1186 aaPredicted RBP10.79□□□□□ -0.68
USP39-215ENST00000481409 MAFFQ9ULX9 164 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 PYCARDQ9ULZ3 195 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 PRG3Q9Y2Y8 225 aaPredicted RBP10.79□□□□□ -0.68
USP39-215ENST00000481409 TSC2P49815 1807 aa10.79□□□□□ -0.68
USP39-215ENST00000481409 B4GALT3O60512 393 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 SOD2P04179 222 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 CALB1P05937 261 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 SYN1P17600 705 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 ACADSBP45954 432 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 BRCC3P46736 316 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 GATMP50440 423 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 BCAT1P54687 386 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 EPHB4P54760 987 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 NOMO3P69849 1222 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 MTF1Q14872 753 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 NFE2Q16621 373 aaPredicted RBP10.78□□□□□ -0.68
USP39-215ENST00000481409 PAN2Q504Q3 1202 aaKnown RBP10.78□□□□□ -0.68
USP39-215ENST00000481409 ARHGAP29Q52LW3 1261 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 INTS6LQ5JSJ4 861 aaKnown RBP10.78□□□□□ -0.68
USP39-215ENST00000481409 FAM171BQ6P995 826 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 C4orf50Q6ZRC1 276 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 DDX53Q86TM3 631 aaKnown RBP10.78□□□□□ -0.68
USP39-215ENST00000481409 ACOT1Q86TX2 421 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 ZDHHC17Q8IUH5 632 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 ANKRD52Q8NB46 1076 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 COLGALT1Q8NBJ5 622 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 OLIG1Q8TAK6 271 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 MYCBPAPQ8TBZ2 947 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 SLC20A1Q8WUM9 679 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 CTNNBL1Q8WYA6 563 aaPredicted RBP10.78□□□□□ -0.68
USP39-215ENST00000481409 ELMO3Q96BJ8 720 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 CYFIP2Q96F07 1278 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 FUBP3Q96I24 572 aaKnown RBP eCLIP10.78□□□□□ -0.68
USP39-215ENST00000481409 CEP295NLQ96MC4 621 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 TWNKQ96RR1 684 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 SYT15Q9BQS2 421 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 TTPALQ9BTX7 342 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 PNPLA8Q9NP80 782 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 SPTLC3Q9NUV7 552 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 SEPT11Q9NVA2 429 aaKnown RBP10.78□□□□□ -0.68
USP39-215ENST00000481409 WDR35Q9P2L0 1181 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 HSFX1Q9UBD0 423 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 LZTS1Q9Y250 596 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 BACE2Q9Y5Z0 518 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 PTPRSQ13332 1948 aa10.78□□□□□ -0.68
USP39-215ENST00000481409 C5orf67F2Z3F1 127 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 ZNF263O14978 683 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 TLL1O43897 1013 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 C1RP00736 705 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 FTLP02792 175 aaPredicted RBP10.77□□□□□ -0.69
USP39-215ENST00000481409 ITGB1P05556 798 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 RB1P06400 928 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 BRD2P25440 801 aaKnown RBP10.77□□□□□ -0.69
USP39-215ENST00000481409 BMP8BP34820 402 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 MAGEA10P43363 369 aaPredicted RBP10.77□□□□□ -0.69
USP39-215ENST00000481409 HADHBP55084 474 aaKnown RBP10.77□□□□□ -0.69
USP39-215ENST00000481409 GPC5P78333 572 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 TAP1Q03518 808 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 UBE3AQ05086 875 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 BST2Q10589 180 aaKnown RBP10.77□□□□□ -0.69
USP39-215ENST00000481409 PKDCCQ504Y2 493 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 LIN9Q5TKA1 542 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 FAM171A1Q5VUB5 890 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 TAF3Q5VWG9 929 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 PIK3R5Q8WYR1 880 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 TFAP2BQ92481 460 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 HSFY1Q96LI6 401 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 HERC2P3Q9BVR0 1158 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 MRPL47Q9HD33 250 aaKnown RBP10.77□□□□□ -0.69
USP39-215ENST00000481409 ABCB6Q9NP58 842 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 AVENQ9NQS1 362 aaPredicted RBP10.77□□□□□ -0.69
USP39-215ENST00000481409 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.77□□□□□ -0.69
USP39-215ENST00000481409 CHST7Q9NS84 486 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 CXXC1Q9P0U4 656 aaPredicted RBP10.77□□□□□ -0.69
USP39-215ENST00000481409 UVRAGQ9P2Y5 699 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 HMGXB4Q9UGU5 601 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 GTF3C4Q9UKN8 822 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 TSPAN16Q9UKR8 245 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 REXO2Q9Y3B8 237 aaKnown RBP10.77□□□□□ -0.69
USP39-215ENST00000481409 MRPL42Q9Y6G3 142 aaKnown RBP10.77□□□□□ -0.69
USP39-215ENST00000481409 SCINQ9Y6U3 715 aa10.77□□□□□ -0.69
USP39-215ENST00000481409 M0QYV0 167 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms