RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 SLC27A1Q6PCB7 646 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 TMEM184AQ6ZMB5 413 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 DTHD1Q6ZMT9 781 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 DDX53Q86TM3 631 aaKnown RBP7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 TMEM173Q86WV6 379 aaPredicted RBP7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 ZNF280BQ86YH2 543 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 VPS52Q8N1B4 723 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 MRPL43Q8N983 215 aaKnown RBP7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 TMEM87AQ8NBN3 555 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 VN1R2Q8NFZ6 395 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 DEPTORQ8TB45 409 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 CASP10Q92851 521 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 CCDC97Q96F63 343 aaPredicted RBP7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 IGSF21Q96ID5 467 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 TMEM175Q9BSA9 504 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 EIF2AQ9BY44 585 aaKnown RBP7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 ZBP1Q9H171 429 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 PRMT7Q9NVM4 692 aaPredicted RBP7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 DNAJB4Q9UDY4 337 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 USP15Q9Y4E8 981 aaPredicted RBP7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 MTCL1Q9Y4B5 1905 aaKnown RBP7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 CITO14578 2027 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 ZMYM2Q9UBW7 1377 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 A0A1B0GUA9 196 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 ARL5CA6NH57 179 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 N4BP3O15049 544 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 INPPL1O15357 1258 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 B4GALT5O43286 388 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 DCXO43602 365 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 CLASP2O75122 1294 aaKnown RBP7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 DDHD2O94830 711 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 NPTXRO95502 500 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 CXCL14O95715 111 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 POMCP01189 267 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 ALDH2P05091 517 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 ZSCAN22P10073 491 aaPredicted RBP7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 CTSAP10619 480 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 HOXB8P17481 243 aaPredicted RBP7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 MLH1P40692 756 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 RBM10P98175 930 aaKnown RBP7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 KCNC3Q14003 757 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 ECM1Q16610 540 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 MAPK6Q16659 721 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 FAM187BQ17R55 369 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 TMEM31Q5JXX7 168 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 KRT79Q5XKE5 535 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 ANKRD54Q6NXT1 300 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 IGSF22Q8N9C0 903 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 ZSCAN18Q8TBC5 510 aaPredicted RBP7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 KIFAP3Q92845 792 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 PBXIP1Q96AQ6 731 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 IFT74Q96LB3 600 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 GAD1Q99259 594 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 APOL6Q9BWW8 343 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 BHMT2Q9H2M3 363 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 FZD8Q9H461 694 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 NXF3Q9H4D5 531 aaKnown RBP7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 PIDD1Q9HB75 910 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 DDX19AQ9NUU7 478 aaKnown RBP7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 RAPGEFL1Q9UHV5 662 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 DNM3Q9UQ16 869 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 SMC3Q9UQE7 1217 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 FAN1Q9Y2M0 1017 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 GIT1Q9Y2X7 761 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 HES2Q9Y543 173 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 IRAK3Q9Y616 596 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 PLXNA3P51805 1871 aa7.49□□□□□ -1.21
CCDC88A-213ENST00000476903 C2orf16Q68DN1 1984 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 NRP1O14786 923 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 B4GALT3O60512 393 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 FAM13AO94988 1023 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 PRKCBP05771 671 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 AKAP5P24588 427 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 OR1G1P47890 313 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 SCNN1GP51170 649 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 EFNA5P52803 228 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 ATP2C1P98194 919 aaPredicted RBP7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 ITIH3Q06033 890 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 DSC1Q08554 894 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 PRPF4BQ13523 1007 aaKnown RBP7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 CBX2Q14781 532 aaPredicted RBP7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 SYCE2Q6PIF2 218 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 PRR23BQ6ZRT6 265 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 SYDE1Q6ZW31 735 aaPredicted RBP7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 PPFIBP1Q86W92 1011 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 COLGALT2Q8IYK4 626 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 SUSD6Q92537 303 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 RPS6KC1Q96S38 1066 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 ADPGKQ9BRR6 497 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 PHF7Q9BWX1 381 aaPredicted RBP7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 EMILIN2Q9BXX0 1053 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 CCDC113Q9H0I3 377 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 S1PR5Q9H228 398 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 MRPL17Q9NRX2 175 aaKnown RBP7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 PARP2Q9UGN5 583 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 SSX2IPQ9Y2D8 614 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 HCFC2Q9Y5Z7 792 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 MYO10Q9HD67 2058 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms