RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 ZCCHC9Q8N567 271 aaKnown RBP5.29□□□□□ -1.56
USP4-209ENST00000475873 ATAD1Q8NBU5 361 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 CTCFLQ8NI51 663 aaPredicted RBP5.29□□□□□ -1.56
USP4-209ENST00000475873 C1orf216Q8TAB5 229 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 DNASE2BQ8WZ79 361 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 SLC22A12Q96S37 553 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 FAM117AQ9C073 453 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 SLC6A17Q9H1V8 727 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 LINC00597Q9H2U6 94 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 PDZD7Q9H5P4 517 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 THG1LQ9NWX6 298 aaKnown RBP5.29□□□□□ -1.56
USP4-209ENST00000475873 TCEAL9Q9UHQ7 104 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 CYP8B1Q9UNU6 501 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 PCDHGB2Q9Y5G2 931 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 HEMK1Q9Y5R4 338 aaPredicted RBP5.29□□□□□ -1.56
USP4-209ENST00000475873 A0A1W2PQF6 199 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 SMCO2A6NFE2 343 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 K7ENP7 123 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 KCNK3O14649 394 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 SYN3O14994 580 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 GAS7O60861 476 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 TADA3O75528 432 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 ALDH1A2O94788 518 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 CYP21A2P08686 494 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 RNF224P0DH78 156 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 CPB1P15086 417 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 SDSP20132 328 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 SFNP31947 248 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 MATKP42679 507 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 SLC6A11P48066 632 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 JAK3P52333 1124 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 MRPS21P82921 87 aaKnown RBP5.28□□□□□ -1.56
USP4-209ENST00000475873 ZXDBP98169 803 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 USP4Q13107 963 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 DNAJC3Q13217 504 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 PDGFRLQ15198 375 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 ZNF77Q15935 545 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 IGFBP7Q16270 282 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 KCNT1Q5JUK3 1230 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 LRCH2Q5VUJ6 765 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 LMBRD2Q68DH5 695 aaPredicted RBP5.28□□□□□ -1.56
USP4-209ENST00000475873 TXNDC8Q6A555 127 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 CENPPQ6IPU0 288 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 INO80CQ6PI98 192 aaPredicted RBP5.28□□□□□ -1.56
USP4-209ENST00000475873 CWC27Q6UX04 472 aaKnown RBP5.28□□□□□ -1.56
USP4-209ENST00000475873 LAYNQ6UX15 382 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 SLC36A4Q6YBV0 504 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 MIER3Q7Z3K6 550 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 MIB1Q86YT6 1006 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 EFCAB13Q8IY85 973 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 MB21D2Q8IYB1 491 aaPredicted RBP5.28□□□□□ -1.56
USP4-209ENST00000475873 HACE1Q8IYU2 909 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 RGL4Q8IZJ4 473 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 PHTF2Q8N3S3 785 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 MAB21L3Q8N8X9 362 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.28□□□□□ -1.56
USP4-209ENST00000475873 STKLD1Q8NE28 680 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 SLC7A3Q8WY07 619 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 ERLEC1Q96DZ1 483 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 ZMAT2Q96NC0 199 aaKnown RBP5.28□□□□□ -1.56
USP4-209ENST00000475873 RIT2Q99578 217 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 LZTS2Q9BRK4 669 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 ZDHHC5Q9C0B5 715 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 TDP1Q9NUW8 608 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 BCCIPQ9P287 314 aaKnown RBP eCLIP5.28□□□□□ -1.56
USP4-209ENST00000475873 PLEKHB1Q9UF11 243 aaPredicted RBP5.28□□□□□ -1.56
USP4-209ENST00000475873 GDAQ9Y2T3 454 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 ABCA2Q9BZC7 2435 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 SDK2Q58EX2 2172 aa5.28□□□□□ -1.56
USP4-209ENST00000475873 ANAPC1Q9H1A4 1944 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 MED13LQ71F56 2210 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 A0A1B0GTW7 788 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 SMIM28A0A1B0GU29 152 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 A0A1B0GVT2 93 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 MTMR11A4FU01 709 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 H7C4K7 107 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 PODXLO00592 558 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 EFSO43281 561 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 LARGE1O95461 756 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 F11P03951 625 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 HMGA1P17096 107 aaKnown RBP5.27□□□□□ -1.57
USP4-209ENST00000475873 NDUFV2P19404 249 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 GLRA2P23416 452 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 ACTN2P35609 894 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 ACADVLP49748 655 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 EPHB3P54753 998 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 AMPD2Q01433 879 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 PLD1Q13393 1074 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 MTF1Q14872 753 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 PCBP1Q15365 356 aaKnown RBP eCLIP5.27□□□□□ -1.57
USP4-209ENST00000475873 ZC2HC1CQ53FD0 456 aaPredicted RBP5.27□□□□□ -1.57
USP4-209ENST00000475873 ARHGAP15Q53QZ3 475 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 ZNF280DQ6N043 979 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 PPP1R18Q6NYC8 613 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 RP1L1Q8IWN7 2480 aaPredicted RBP5.27□□□□□ -1.57
USP4-209ENST00000475873 PGBD3Q8N328 593 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 CPA6Q8N4T0 437 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 CEP120Q8N960 986 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 ZNF248Q8NDW4 579 aa5.27□□□□□ -1.57
USP4-209ENST00000475873 RDM1Q8NG50 284 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms