RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 PRPF6O94906 941 aaKnown RBP18.8■□□□□ 0.6
COL7A1-208ENST00000470076 TMEM191BP0C7N4 346 aa18.8■□□□□ 0.6
COL7A1-208ENST00000470076 CSH1P0DML2 217 aa18.8■□□□□ 0.6
COL7A1-208ENST00000470076 CSH2P0DML3 217 aa18.8■□□□□ 0.6
COL7A1-208ENST00000470076 HMGA1P17096 107 aaKnown RBP18.8■□□□□ 0.6
COL7A1-208ENST00000470076 DDX6P26196 483 aaKnown RBP eCLIP18.8■□□□□ 0.6
COL7A1-208ENST00000470076 NLRP12P59046 1061 aa18.8■□□□□ 0.6
COL7A1-208ENST00000470076 RBP5P82980 135 aa18.8■□□□□ 0.6
COL7A1-208ENST00000470076 MYL7Q01449 175 aa18.8■□□□□ 0.6
COL7A1-208ENST00000470076 BFSP1Q12934 665 aa18.8■□□□□ 0.6
COL7A1-208ENST00000470076 GAS6Q14393 721 aa18.8■□□□□ 0.6
COL7A1-208ENST00000470076 PUM1Q14671 1186 aaKnown RBP eCLIP18.8■□□□□ 0.6
COL7A1-208ENST00000470076 GPD1LQ8N335 351 aa18.8■□□□□ 0.6
COL7A1-208ENST00000470076 LINC00301Q8NCQ3 95 aa18.8■□□□□ 0.6
COL7A1-208ENST00000470076 CXorf38Q8TB03 319 aa18.8■□□□□ 0.6
COL7A1-208ENST00000470076 NOC3LQ8WTT2 800 aaKnown RBP18.8■□□□□ 0.6
COL7A1-208ENST00000470076 PCIF1Q9H4Z3 704 aa18.8■□□□□ 0.6
COL7A1-208ENST00000470076 PDE11AQ9HCR9 933 aa18.8■□□□□ 0.6
COL7A1-208ENST00000470076 ABCB6Q9NP58 842 aa18.8■□□□□ 0.6
COL7A1-208ENST00000470076 TMLHEQ9NVH6 421 aa18.8■□□□□ 0.6
COL7A1-208ENST00000470076 DDX43Q9NXZ2 648 aaKnown RBP18.8■□□□□ 0.6
COL7A1-208ENST00000470076 DNAH14Q0VDD8 3507 aa18.8■□□□□ 0.6
COL7A1-208ENST00000470076 OBSL1O75147 1896 aa18.8■□□□□ 0.6
COL7A1-208ENST00000470076 F11P03951 625 aa18.79■□□□□ 0.6
COL7A1-208ENST00000470076 KRT19P08727 400 aa18.79■□□□□ 0.6
COL7A1-208ENST00000470076 AVPR1AP37288 418 aa18.79■□□□□ 0.6
COL7A1-208ENST00000470076 RPL10AP62906 217 aaKnown RBP18.79■□□□□ 0.6
COL7A1-208ENST00000470076 SATB1Q01826 763 aa18.79■□□□□ 0.6
COL7A1-208ENST00000470076 SURF1Q15526 300 aa18.79■□□□□ 0.6
COL7A1-208ENST00000470076 ITPRIPL2Q3MIP1 535 aa18.79■□□□□ 0.6
COL7A1-208ENST00000470076 INTS6LQ5JSJ4 861 aaKnown RBP18.79■□□□□ 0.6
COL7A1-208ENST00000470076 TXNDC11Q6PKC3 985 aa18.79■□□□□ 0.6
COL7A1-208ENST00000470076 TMEM150AQ86TG1 271 aa18.79■□□□□ 0.6
COL7A1-208ENST00000470076 TOP6BLQ8N6T0 577 aa18.79■□□□□ 0.6
COL7A1-208ENST00000470076 TTC8Q8TAM2 541 aa18.79■□□□□ 0.6
COL7A1-208ENST00000470076 PI4K2AQ9BTU6 479 aa18.79■□□□□ 0.6
COL7A1-208ENST00000470076 CUEDC2Q9H467 287 aa18.79■□□□□ 0.6
COL7A1-208ENST00000470076 RBM12Q9NTZ6 932 aaKnown RBP18.79■□□□□ 0.6
COL7A1-208ENST00000470076 FOXD4L1Q9NU39 408 aa18.79■□□□□ 0.6
COL7A1-208ENST00000470076 RAB23Q9ULC3 237 aa18.79■□□□□ 0.6
COL7A1-208ENST00000470076 R3HCC1Q9Y3T6 440 aaKnown RBP18.79■□□□□ 0.6
COL7A1-208ENST00000470076 SNX9Q9Y5X1 595 aa18.79■□□□□ 0.6
COL7A1-208ENST00000470076 SPTLC2O15270 562 aa18.78■□□□□ 0.6
COL7A1-208ENST00000470076 PPP6R2O75170 966 aa18.78■□□□□ 0.6
COL7A1-208ENST00000470076 PAPSS2O95340 614 aaPredicted RBP18.78■□□□□ 0.6
COL7A1-208ENST00000470076 PCSK1P29120 753 aa18.78■□□□□ 0.6
COL7A1-208ENST00000470076 LHX1P48742 406 aa18.78■□□□□ 0.6
COL7A1-208ENST00000470076 TNK2Q07912 1038 aa18.78■□□□□ 0.6
COL7A1-208ENST00000470076 MYO1EQ12965 1108 aa18.78■□□□□ 0.6
COL7A1-208ENST00000470076 DGLUCYQ7Z3D6 616 aa18.78■□□□□ 0.6
COL7A1-208ENST00000470076 SYNPOQ8N3V7 929 aa18.78■□□□□ 0.6
COL7A1-208ENST00000470076 MAB21L3Q8N8X9 362 aa18.78■□□□□ 0.6
COL7A1-208ENST00000470076 MRPS31Q92665 395 aaKnown RBP18.78■□□□□ 0.6
COL7A1-208ENST00000470076 ANKRD36BP1Q96IX9 119 aa18.78■□□□□ 0.6
COL7A1-208ENST00000470076 ZNF396Q96N95 335 aaPredicted RBP18.78■□□□□ 0.6
COL7A1-208ENST00000470076 BACH2Q9BYV9 841 aa18.78■□□□□ 0.6
COL7A1-208ENST00000470076 MTMR12Q9C0I1 747 aa18.78■□□□□ 0.6
COL7A1-208ENST00000470076 SMG9Q9H0W8 520 aaKnown RBP18.78■□□□□ 0.6
COL7A1-208ENST00000470076 KIF9Q9HAQ2 790 aa18.78■□□□□ 0.6
COL7A1-208ENST00000470076 KBTBD4Q9NVX7 518 aa18.78■□□□□ 0.6
COL7A1-208ENST00000470076 DLL3Q9NYJ7 618 aa18.78■□□□□ 0.6
COL7A1-208ENST00000470076 UXTQ9UBK9 157 aaPredicted RBP18.78■□□□□ 0.6
COL7A1-208ENST00000470076 SIX4Q9UIU6 781 aa18.78■□□□□ 0.6
COL7A1-208ENST00000470076 GMEB2Q9UKD1 530 aa18.78■□□□□ 0.6
COL7A1-208ENST00000470076 ZNF233A6NK53 670 aa18.77■□□□□ 0.6
COL7A1-208ENST00000470076 GABRDO14764 452 aa18.77■□□□□ 0.6
COL7A1-208ENST00000470076 ACAT1P24752 427 aaKnown RBP18.77■□□□□ 0.6
COL7A1-208ENST00000470076 GPR15P49685 360 aa18.77■□□□□ 0.6
COL7A1-208ENST00000470076 AMPD3Q01432 767 aa18.77■□□□□ 0.6
COL7A1-208ENST00000470076 CCINQ13939 588 aa18.77■□□□□ 0.6
COL7A1-208ENST00000470076 PON2Q15165 354 aa18.77■□□□□ 0.6
COL7A1-208ENST00000470076 E2F4Q16254 413 aa18.77■□□□□ 0.6
COL7A1-208ENST00000470076 WDR44Q5JSH3 913 aa18.77■□□□□ 0.6
COL7A1-208ENST00000470076 DPH6Q7L8W6 267 aa18.77■□□□□ 0.6
COL7A1-208ENST00000470076 MON1AQ86VX9 555 aa18.77■□□□□ 0.6
COL7A1-208ENST00000470076 ADGRF2Q8IZF7 708 aa18.77■□□□□ 0.6
COL7A1-208ENST00000470076 USP13Q92995 863 aaPredicted RBP18.77■□□□□ 0.6
COL7A1-208ENST00000470076 TRMT2BQ96GJ1 504 aaKnown RBP18.77■□□□□ 0.6
COL7A1-208ENST00000470076 PKMYT1Q99640 499 aa18.77■□□□□ 0.6
COL7A1-208ENST00000470076 FAM83CQ9BQN1 747 aa18.77■□□□□ 0.6
COL7A1-208ENST00000470076 TRIM9Q9C026 710 aa18.77■□□□□ 0.6
COL7A1-208ENST00000470076 KIAA1586Q9HCI6 787 aa18.77■□□□□ 0.6
COL7A1-208ENST00000470076 GKN1Q9NS71 199 aa18.77■□□□□ 0.6
COL7A1-208ENST00000470076 TDP1Q9NUW8 608 aa18.77■□□□□ 0.6
COL7A1-208ENST00000470076 INTS13Q9NVM9 706 aa18.77■□□□□ 0.6
COL7A1-208ENST00000470076 GTF3C4Q9UKN8 822 aa18.77■□□□□ 0.6
COL7A1-208ENST00000470076 MAGED2Q9UNF1 606 aaPredicted RBP18.77■□□□□ 0.6
COL7A1-208ENST00000470076 EIF3DO15371 548 aaKnown RBP eCLIP18.76■□□□□ 0.59
COL7A1-208ENST00000470076 NOL4O94818 638 aa18.76■□□□□ 0.59
COL7A1-208ENST00000470076 TNNC2P02585 160 aa18.76■□□□□ 0.59
COL7A1-208ENST00000470076 SDHBP21912 280 aa18.76■□□□□ 0.59
COL7A1-208ENST00000470076 CYP2F1P24903 491 aa18.76■□□□□ 0.59
COL7A1-208ENST00000470076 CNR2P34972 360 aa18.76■□□□□ 0.59
COL7A1-208ENST00000470076 DDR2Q16832 855 aa18.76■□□□□ 0.59
COL7A1-208ENST00000470076 DUOXA2Q1HG44 320 aa18.76■□□□□ 0.59
COL7A1-208ENST00000470076 CFAP221Q4G0U5 840 aa18.76■□□□□ 0.59
COL7A1-208ENST00000470076 SCARA3Q6AZY7 606 aa18.76■□□□□ 0.59
COL7A1-208ENST00000470076 LAIR1Q6GTX8 287 aa18.76■□□□□ 0.59
COL7A1-208ENST00000470076 Q6ZS52 159 aa18.76■□□□□ 0.59
COL7A1-208ENST00000470076 OSTM1Q86WC4 334 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms