RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 DLL3Q9NYJ7 618 aa22.67■■□□□ 1.22
COL9A3-207ENST00000467819 MAGED2Q9UNF1 606 aaPredicted RBP22.67■■□□□ 1.22
COL9A3-207ENST00000467819 MTMR6Q9Y217 621 aa22.67■■□□□ 1.22
COL9A3-207ENST00000467819 SPTBN2O15020 2390 aa22.67■■□□□ 1.22
COL9A3-207ENST00000467819 ANAPC1Q9H1A4 1944 aa22.67■■□□□ 1.22
COL9A3-207ENST00000467819 NCOR2Q9Y618 2525 aa22.66■■□□□ 1.22
COL9A3-207ENST00000467819 FRMD3A2A2Y4 597 aa22.66■■□□□ 1.22
COL9A3-207ENST00000467819 HUS1O60921 280 aa22.66■■□□□ 1.22
COL9A3-207ENST00000467819 PRPF6O94906 941 aaKnown RBP22.66■■□□□ 1.22
COL9A3-207ENST00000467819 KRT19P08727 400 aa22.66■■□□□ 1.22
COL9A3-207ENST00000467819 HMGA1P17096 107 aaKnown RBP22.66■■□□□ 1.22
COL9A3-207ENST00000467819 ACAT1P24752 427 aaKnown RBP22.66■■□□□ 1.22
COL9A3-207ENST00000467819 NLRP12P59046 1061 aa22.66■■□□□ 1.22
COL9A3-207ENST00000467819 DMWDQ09019 674 aa22.66■■□□□ 1.22
COL9A3-207ENST00000467819 ALCAMQ13740 583 aa22.66■■□□□ 1.22
COL9A3-207ENST00000467819 SLC39A14Q15043 492 aa22.66■■□□□ 1.22
COL9A3-207ENST00000467819 DGKKQ5KSL6 1271 aa22.66■■□□□ 1.22
COL9A3-207ENST00000467819 PRR23BQ6ZRT6 265 aa22.66■■□□□ 1.22
COL9A3-207ENST00000467819 TMEM150AQ86TG1 271 aa22.66■■□□□ 1.22
COL9A3-207ENST00000467819 CMTM8Q8IZV2 173 aa22.66■■□□□ 1.22
COL9A3-207ENST00000467819 CSGALNACT2Q8N6G5 542 aa22.66■■□□□ 1.22
COL9A3-207ENST00000467819 MAB21L3Q8N8X9 362 aa22.66■■□□□ 1.22
COL9A3-207ENST00000467819 PDE11AQ9HCR9 933 aa22.66■■□□□ 1.22
COL9A3-207ENST00000467819 THG1LQ9NWX6 298 aaKnown RBP22.66■■□□□ 1.22
COL9A3-207ENST00000467819 DDX43Q9NXZ2 648 aaKnown RBP22.66■■□□□ 1.22
COL9A3-207ENST00000467819 ITGA11Q9UKX5 1188 aa22.66■■□□□ 1.22
COL9A3-207ENST00000467819 GREB1Q4ZG55 1949 aa22.65■■□□□ 1.22
COL9A3-207ENST00000467819 CHURC1-FNTBB4DL54 471 aa22.65■■□□□ 1.22
COL9A3-207ENST00000467819 EXTL3O43909 919 aa22.65■■□□□ 1.22
COL9A3-207ENST00000467819 F11P03951 625 aa22.65■■□□□ 1.22
COL9A3-207ENST00000467819 AVPR1AP37288 418 aa22.65■■□□□ 1.22
COL9A3-207ENST00000467819 FNTBP49356 437 aa22.65■■□□□ 1.22
COL9A3-207ENST00000467819 NFE2Q16621 373 aaPredicted RBP22.65■■□□□ 1.22
COL9A3-207ENST00000467819 ITPRIPL2Q3MIP1 535 aa22.65■■□□□ 1.22
COL9A3-207ENST00000467819 LRRC52Q8N7C0 313 aa22.65■■□□□ 1.22
COL9A3-207ENST00000467819 MTMR12Q9C0I1 747 aa22.65■■□□□ 1.22
COL9A3-207ENST00000467819 GKN1Q9NS71 199 aa22.65■■□□□ 1.22
COL9A3-207ENST00000467819 CCL26Q9Y258 94 aa22.65■■□□□ 1.22
COL9A3-207ENST00000467819 SPAG17Q6Q759 2223 aa22.64■■□□□ 1.21
COL9A3-207ENST00000467819 TMEM191BP0C7N4 346 aa22.64■■□□□ 1.21
COL9A3-207ENST00000467819 MYL7Q01449 175 aa22.64■■□□□ 1.21
COL9A3-207ENST00000467819 DDR2Q16832 855 aa22.64■■□□□ 1.21
COL9A3-207ENST00000467819 LMBRD2Q68DH5 695 aaPredicted RBP22.64■■□□□ 1.21
COL9A3-207ENST00000467819 TXNDC8Q6A555 127 aa22.64■■□□□ 1.21
COL9A3-207ENST00000467819 HEATR6Q6AI08 1181 aaKnown RBP22.64■■□□□ 1.21
COL9A3-207ENST00000467819 OSTM1Q86WC4 334 aa22.64■■□□□ 1.21
COL9A3-207ENST00000467819 CCDC65Q8IXS2 484 aa22.64■■□□□ 1.21
COL9A3-207ENST00000467819 ACBD6Q9BR61 282 aa22.64■■□□□ 1.21
COL9A3-207ENST00000467819 TMEM206Q9H813 350 aa22.64■■□□□ 1.21
COL9A3-207ENST00000467819 PARD6AQ9NPB6 346 aa22.64■■□□□ 1.21
COL9A3-207ENST00000467819 C2orf42Q9NWW7 574 aa22.64■■□□□ 1.21
COL9A3-207ENST00000467819 ZMYM5Q9UJ78 669 aa22.64■■□□□ 1.21
COL9A3-207ENST00000467819 SNX9Q9Y5X1 595 aa22.64■■□□□ 1.21
COL9A3-207ENST00000467819 HELZP42694 1942 aaKnown RBP22.63■■□□□ 1.21
COL9A3-207ENST00000467819 K7ESF4 209 aa22.63■■□□□ 1.21
COL9A3-207ENST00000467819 CSH1P0DML2 217 aa22.63■■□□□ 1.21
COL9A3-207ENST00000467819 CSH2P0DML3 217 aa22.63■■□□□ 1.21
COL9A3-207ENST00000467819 CYP2F1P24903 491 aa22.63■■□□□ 1.21
COL9A3-207ENST00000467819 SRSF5Q13243 272 aaKnown RBP22.63■■□□□ 1.21
COL9A3-207ENST00000467819 CCINQ13939 588 aa22.63■■□□□ 1.21
COL9A3-207ENST00000467819 STK38Q15208 465 aa22.63■■□□□ 1.21
COL9A3-207ENST00000467819 CCDC142Q17RM4 750 aa22.63■■□□□ 1.21
COL9A3-207ENST00000467819 INTS6LQ5JSJ4 861 aaKnown RBP22.63■■□□□ 1.21
COL9A3-207ENST00000467819 TRIM68Q6AZZ1 485 aa22.63■■□□□ 1.21
COL9A3-207ENST00000467819 LAIR1Q6GTX8 287 aa22.63■■□□□ 1.21
COL9A3-207ENST00000467819 ADGRF2Q8IZF7 708 aa22.63■■□□□ 1.21
COL9A3-207ENST00000467819 TMEM86AQ8N2M4 240 aa22.63■■□□□ 1.21
COL9A3-207ENST00000467819 GPD1LQ8N335 351 aa22.63■■□□□ 1.21
COL9A3-207ENST00000467819 GLIS3Q8NEA6 775 aa22.63■■□□□ 1.21
COL9A3-207ENST00000467819 CXorf38Q8TB03 319 aa22.63■■□□□ 1.21
COL9A3-207ENST00000467819 LEO1Q8WVC0 666 aaPredicted RBP22.63■■□□□ 1.21
COL9A3-207ENST00000467819 MRPS31Q92665 395 aaKnown RBP22.63■■□□□ 1.21
COL9A3-207ENST00000467819 USP13Q92995 863 aaPredicted RBP22.63■■□□□ 1.21
COL9A3-207ENST00000467819 HPS3Q969F9 1004 aa22.63■■□□□ 1.21
COL9A3-207ENST00000467819 INTS4Q96HW7 963 aaKnown RBP22.63■■□□□ 1.21
COL9A3-207ENST00000467819 SIX4Q9UIU6 781 aa22.63■■□□□ 1.21
COL9A3-207ENST00000467819 GTF3C4Q9UKN8 822 aa22.63■■□□□ 1.21
COL9A3-207ENST00000467819 MORC2Q9Y6X9 1032 aaPredicted RBP22.63■■□□□ 1.21
COL9A3-207ENST00000467819 PTPRDP23468 1912 aa22.63■■□□□ 1.21
COL9A3-207ENST00000467819 HCRTO43612 131 aa22.62■■□□□ 1.21
COL9A3-207ENST00000467819 DDX6P26196 483 aaKnown RBP eCLIP22.62■■□□□ 1.21
COL9A3-207ENST00000467819 HOXC13P31276 330 aa22.62■■□□□ 1.21
COL9A3-207ENST00000467819 RBP5P82980 135 aa22.62■■□□□ 1.21
COL9A3-207ENST00000467819 LMNB2Q03252 620 aa22.62■■□□□ 1.21
COL9A3-207ENST00000467819 SPEM2Q0P670 501 aa22.62■■□□□ 1.21
COL9A3-207ENST00000467819 SIM2Q14190 667 aaPredicted RBP22.62■■□□□ 1.21
COL9A3-207ENST00000467819 ANKRD36BP1Q96IX9 119 aa22.62■■□□□ 1.21
COL9A3-207ENST00000467819 ZSCAN16Q9H4T2 348 aaPredicted RBP22.62■■□□□ 1.21
COL9A3-207ENST00000467819 EBF3Q9H4W6 596 aa22.62■■□□□ 1.21
COL9A3-207ENST00000467819 HPS4Q9NQG7 708 aa22.62■■□□□ 1.21
COL9A3-207ENST00000467819 TDP1Q9NUW8 608 aa22.62■■□□□ 1.21
COL9A3-207ENST00000467819 GDAP2Q9NXN4 497 aa22.62■■□□□ 1.21
COL9A3-207ENST00000467819 SDK1Q7Z5N4 2213 aa22.62■■□□□ 1.21
COL9A3-207ENST00000467819 PTPRJQ12913 1337 aa22.61■■□□□ 1.21
COL9A3-207ENST00000467819 HRO43593 1189 aa22.61■■□□□ 1.21
COL9A3-207ENST00000467819 STX6O43752 255 aa22.61■■□□□ 1.21
COL9A3-207ENST00000467819 PAPSS2O95340 614 aaPredicted RBP22.61■■□□□ 1.21
COL9A3-207ENST00000467819 TGM1P22735 817 aa22.61■■□□□ 1.21
COL9A3-207ENST00000467819 NASPP49321 788 aaPredicted RBP22.61■■□□□ 1.21
COL9A3-207ENST00000467819 RPL10AP62906 217 aaKnown RBP22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms