RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 PARP2Q9UGN5 583 aa19.32■□□□□ 0.68
COL9A3-205ENST00000466192 PCYOX1Q9UHG3 505 aa19.32■□□□□ 0.68
COL9A3-205ENST00000466192 UBQLN1Q9UMX0 589 aaKnown RBP19.32■□□□□ 0.68
COL9A3-205ENST00000466192 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.32■□□□□ 0.68
COL9A3-205ENST00000466192 CDY2AQ9Y6F7 541 aa19.32■□□□□ 0.68
COL9A3-205ENST00000466192 FAM187AA6NFU0 413 aa19.31■□□□□ 0.68
COL9A3-205ENST00000466192 OPA1O60313 960 aa19.31■□□□□ 0.68
COL9A3-205ENST00000466192 ELNP15502 786 aa19.31■□□□□ 0.68
COL9A3-205ENST00000466192 MAN1A1P33908 653 aa19.31■□□□□ 0.68
COL9A3-205ENST00000466192 CNGA2Q16280 664 aa19.31■□□□□ 0.68
COL9A3-205ENST00000466192 XKR4Q5GH76 650 aa19.31■□□□□ 0.68
COL9A3-205ENST00000466192 DUPD1Q68J44 220 aa19.31■□□□□ 0.68
COL9A3-205ENST00000466192 LRRC52Q8N7C0 313 aa19.31■□□□□ 0.68
COL9A3-205ENST00000466192 MRPL45Q9BRJ2 306 aaKnown RBP19.31■□□□□ 0.68
COL9A3-205ENST00000466192 XPNPEP3Q9NQH7 507 aa19.31■□□□□ 0.68
COL9A3-205ENST00000466192 GOLGA6CA6NDK9 693 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 PSTPIP1O43586 416 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 GOLGA6DP0CG33 693 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 CYP3A5P20815 502 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 PTGIRP43119 386 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 SSR1P43307 286 aaKnown RBP19.3■□□□□ 0.68
COL9A3-205ENST00000466192 SP3Q02447 781 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 SGO2Q562F6 1265 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 FAM47CQ5HY64 1035 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 DCUN1D2Q6PH85 259 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 DPH6Q7L8W6 267 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 RHOT1Q8IXI2 618 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 CCDC105Q8IYK2 499 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 TTC39CQ8N584 583 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 ARRDC4Q8NCT1 418 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 NT5C1AQ9BXI3 368 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 GOLGA6AQ9NYA3 693 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 RASAL2Q9UJF2 1139 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 STRIP2Q9ULQ0 834 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 PTPN22Q9Y2R2 807 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 NME7Q9Y5B8 376 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 ERICH4A6NGS2 130 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 M0QYV0 167 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 FSCN2O14926 492 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 KCNE1P15382 129 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 TCF4P15884 667 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 KCNJ1P48048 391 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 CYP1B1Q16678 543 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 TWF2Q6IBS0 349 aaKnown RBP19.3■□□□□ 0.68
COL9A3-205ENST00000466192 ARL8AQ96BM9 186 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 HERPUD2Q9BSE4 406 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 SNX24Q9Y343 169 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 TRPV2Q9Y5S1 764 aa19.3■□□□□ 0.68
COL9A3-205ENST00000466192 HMGCRP04035 888 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 ERBB2P04626 1255 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 ASGR1P07306 291 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 PRKAR2AP13861 404 aaKnown RBP19.29■□□□□ 0.68
COL9A3-205ENST00000466192 GJC1P36383 396 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 HSD17B3P37058 310 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 COILP38432 576 aaPredicted RBP19.29■□□□□ 0.68
COL9A3-205ENST00000466192 GPD2P43304 727 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 TAP1Q03518 808 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 SERINC5Q86VE9 423 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 C12orf29Q8N999 325 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 UBA3Q8TBC4 463 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 LRRC45Q96CN5 670 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 PLAAQ9Y263 795 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 F8VP50 259 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 GOLGA8SH3BPF8 625 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 M0QZ92 97 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 PIRO00625 290 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 MYCNP04198 464 aaPredicted RBP19.29■□□□□ 0.68
COL9A3-205ENST00000466192 CTSHP09668 335 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 SOX4Q06945 474 aaPredicted RBP19.29■□□□□ 0.68
COL9A3-205ENST00000466192 KCNA10Q16322 511 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 XYLT1Q86Y38 959 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 CCDC50Q8IVM0 306 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 C1orf54Q8WWF1 131 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 CAPNS2Q96L46 248 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 FMO2Q99518 471 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 PSD3Q9NYI0 1048 aa19.29■□□□□ 0.68
COL9A3-205ENST00000466192 THSD7BQ9C0I4 1608 aa19.28■□□□□ 0.68
COL9A3-205ENST00000466192 GOLGA8KD6RF30 607 aa19.28■□□□□ 0.68
COL9A3-205ENST00000466192 CHRNA1P02708 482 aa19.28■□□□□ 0.68
COL9A3-205ENST00000466192 RFC1P35251 1148 aaPredicted RBP19.28■□□□□ 0.68
COL9A3-205ENST00000466192 PSMC1P62191 440 aaKnown RBP19.28■□□□□ 0.68
COL9A3-205ENST00000466192 PDCLQ13371 301 aa19.28■□□□□ 0.68
COL9A3-205ENST00000466192 UAP1Q16222 522 aaPredicted RBP19.28■□□□□ 0.68
COL9A3-205ENST00000466192 TTMPQ5BVD1 217 aa19.28■□□□□ 0.68
COL9A3-205ENST00000466192 LCLAT1Q6UWP7 414 aa19.28■□□□□ 0.68
COL9A3-205ENST00000466192 KATNAL2Q8IYT4 538 aa19.28■□□□□ 0.68
COL9A3-205ENST00000466192 KLHDC9Q8NEP7 349 aa19.28■□□□□ 0.68
COL9A3-205ENST00000466192 GOLGA2P5Q9HBQ8 144 aa19.28■□□□□ 0.68
COL9A3-205ENST00000466192 KIAA1257Q9ULG3 409 aa19.28■□□□□ 0.68
COL9A3-205ENST00000466192 GRIN2DO15399 1336 aa19.27■□□□□ 0.68
COL9A3-205ENST00000466192 SIGLEC16A6NMB1 481 aa19.27■□□□□ 0.68
COL9A3-205ENST00000466192 CD4P01730 458 aa19.27■□□□□ 0.68
COL9A3-205ENST00000466192 PLTPP55058 493 aa19.27■□□□□ 0.68
COL9A3-205ENST00000466192 SOWAHAQ2M3V2 549 aa19.27■□□□□ 0.68
COL9A3-205ENST00000466192 CCSAPQ6IQ19 270 aaPredicted RBP19.27■□□□□ 0.68
COL9A3-205ENST00000466192 TMC3Q7Z5M5 1100 aa19.27■□□□□ 0.68
COL9A3-205ENST00000466192 SESTD1Q86VW0 696 aa19.27■□□□□ 0.68
COL9A3-205ENST00000466192 JOSD2Q8TAC2 188 aa19.27■□□□□ 0.68
COL9A3-205ENST00000466192 HEMGNQ9BXL5 484 aa19.27■□□□□ 0.68
COL9A3-205ENST00000466192 SENP6Q9GZR1 1112 aaPredicted RBP19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms