RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 EHD1Q9H4M9 534 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 ZNF277Q9NRM2 450 aaPredicted RBP5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 GALNT8Q9NY28 637 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 CGGBP1Q9UFW8 167 aaPredicted RBP5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 HMGXB4Q9UGU5 601 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 GPR55Q9Y2T6 319 aaPredicted RBP5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 ATP6V1DQ9Y5K8 247 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 ZNF804BA4D1E1 1349 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 MAPK8IP3Q9UPT6 1336 aa5.12□□□□□ -1.59
CCDC88A-209ENST00000456975 MYO3BQ8WXR4 1341 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 A0A0G2JPF8 293 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 TRIM43BA6NCK2 446 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 HNRNPCL3B7ZW38 293 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 GOLGA8MH3BSY2 632 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 SULT1B1O43704 296 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 PCDHGA12O60330 932 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 TSC22D2O75157 780 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 DAB1O75553 588 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 RPS6KA5O75582 802 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 SLITRK3O94933 977 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 PENKP01210 267 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 ATP5BP06576 529 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 SLC3A2P08195 630 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 SNRPB2P08579 225 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 SRGAP2CP0DJJ0 459 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 HNRNPCL4P0DMR1 293 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 HPGDP15428 266 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 LPOP22079 712 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 ACTN2P35609 894 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 VPS41P49754 854 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 TPM4P67936 248 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 CYP4F3Q08477 520 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 TBX2Q13207 712 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 IFIT5Q13325 482 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 ZNF267Q14586 743 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 NAA25Q14CX7 972 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 BCL2A1Q16548 175 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 FUT11Q495W5 492 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 AARDQ4LEZ3 155 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 CCDC38Q502W7 563 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 ZBTB37Q5TC79 503 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 AADACL4Q5VUY2 407 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 SLC2A7Q6PXP3 512 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 FASTKD5Q7L8L6 764 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 HID1Q8IV36 788 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 ITPRIPQ8IWB1 547 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 CLRN3Q8NCR9 226 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 NCLNQ969V3 563 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 RNF166Q96A37 237 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 C1orf159Q96HA4 380 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 TNIP3Q96KP6 325 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 CCDC74BQ96LY2 380 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 ELAC2Q9BQ52 826 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 TRIM5Q9C035 493 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 FAM107BQ9H098 131 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 KIAA1683Q9H0B3 1180 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 TRPV4Q9HBA0 871 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 EMC3Q9P0I2 261 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 TEKT2Q9UIF3 430 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 TMEM5Q9Y2B1 443 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 ANKRD6Q9Y2G4 727 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 PCDHGA9Q9Y5G4 932 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 PCDHGA8Q9Y5G5 932 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 PCDHGA7Q9Y5G6 932 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 PCDHGA6Q9Y5G7 932 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 PCDHGA3Q9Y5H0 932 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 PCDHGA2Q9Y5H1 932 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 PXDNLA1KZ92 1463 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 SLC35F4A4IF30 521 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 OR6C65A6NJZ3 312 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 TRAF5O00463 557 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 MAPK13O15264 365 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 SIN3BO75182 1162 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 ERLIN2O94905 339 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 IL10P22301 178 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 HADHBP55084 474 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 POLR2GP62487 172 aaKnown RBP eCLIP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 GSTO1P78417 241 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 NIPAL4Q0D2K0 466 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 TRAP1Q12931 704 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 GEN1Q17RS7 908 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 PABPC1LQ4VXU2 614 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 PLEKHO1Q53GL0 409 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 PRAMEF13Q5VWM6 474 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 CCDC62Q6P9F0 684 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 TUBA3EQ6PEY2 450 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 SHQ1Q6PI26 577 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 LDHAL6AQ6ZMR3 332 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 ENOSF1Q7L5Y1 443 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 NUP54Q7Z3B4 507 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 DNAJB7Q7Z6W7 309 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 MRPL10Q7Z7H8 261 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 CCAR2Q8N163 923 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 GALNT15Q8N3T1 639 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 CCDC155Q8N6L0 562 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 C2orf69Q8N8R5 385 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 NAXEQ8NCW5 288 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 C1orf162Q8NEQ5 155 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 RNF139Q8WU17 664 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 KCTD13Q8WZ19 329 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms